Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01963 ATGTTTTCTTGGTTAACAAGATTAGTTTCATCGTGCTTGAGACCAGTGAGAAGGTATGCACGTATGAACAAAGAtattgaaaatgattttgatgTATCTTCAACATCAGAAGATGCTCTTGTTTGGTGTAAAGACCTTGAGAAACACTCATGTGGTGAATTCTCTTTTGCTGTTGTTCAAGCTAACGAAGTTCTTGAAGATCATAGTCAAGTTGAAACTGGTTCTGATTCTGTCTTTGTTGGTGTTTATGATGGACATGGTGGTCCTGATGCTTCTCGGTTTGTTAATGATCATCTCTTCAATCATCTCATCaGGATTGCTAAAGAAAATGATTCTATCTCCGAAGATATTATAAGGAATGCTGTTACTGCTACGGAGGATGGATTTATGACTCTTGTTAGGAGGAGCTTCGGAATAAAGCCACTGATAGCAGCAATGGGTTCTTGTTGTCTTGTTGGTGTTATCTGGAAAGGGACATTATATATCGCTAATCTTGGAGACTCTCGAGCTGTGATTGGTTCAACTGGTCGATCTAACAAGATAGTTGCTAAACAGTTGACTAAAGAGCACAATGCCTGCAAAGCAGATATCAGAAGAGAACTTAAGTCTTTGCATCCAGAAGATTCGCAAATTGTTGTTATGAAACATGGAACGTGGCGCATTAAAGGCATCATCCAGGTATCAAGATCTATAGGAGATGCATATTTGAAACGGCCGGAGTTCTCCTTTGATCCATCATTCCCGAAGTTCCACTTGTCTGATCCTATCCGCCGACCGGTGCTATCAGCAGAACCATCTATATGTTCAAAAGTGTTACAACCTAACGataaatttgttatatttgCATCTGACGGCCTTTGGGAACACATGACAAATCAGGAAGCTGCTGAGATTGTTCATAGCAACCCTAGAACtGGAATTGCAAGAAGACTTCTTCAGACTGCTATGAATGAGGCGGCAAGGAAAAGGGAAATGAGATATAAAGATCTGCTGAAGGTCGAAAAGGGGATTAGGCGATTTTTCCATGATGATATCACTGTCGTTGTTATCTTCATCGACCATGAGTTGCAGAAGCAGAATGTTGATGTTCCTGAGATATCCATAAAAGGTTTTATCGACACAGTTGGACCATCAGAGTTTAGTAGTTTCCAAGAAATGGAATGA 1164 0.3943 MFSWLTRLVSSCLRPVRRYARMNKDIENDFDVSSTSEDALVWCKDLEKHSCGEFSFAVVQANEVLEDHSQVETGSDSVFVGVYDGHGGPDASRFVNDHLFNHLIRIAKENDSISEDIIRNAVTATEDGFMTLVRRSFGIKPLIAAMGSCCLVGVIWKGTLYIANLGDSRAVIGSTGRSNKIVAKQLTKEHNACKADIRRELKSLHPEDSQIVVMKHGTWRIKGIIQVSRSIGDAYLKRPEFSFDPSFPKFHLSDPIRRPVLSAEPSICSKVLQPNDKFVIFASDGLWEHMTNQEAAEIVHSNPRTGIARRLLQTAMNEAARKREMRYKDLLKVEKGIRRFFHDDITVVVIFIDHELQKQNVDVPEISIKGFIDTVGPSEFSSFQEME 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01963 387 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 372 - -
Tsu01g01963 387 SMART PP2C_4 33 350 IPR001932 -
Tsu01g01963 387 SUPERFAMILY PP2C-like 59 353 IPR036457 -
Tsu01g01963 387 Pfam Protein phosphatase 2C 66 321 IPR001932 -
Tsu01g01963 387 CDD PP2Cc 54 352 IPR001932 -
Tsu01g01963 387 PANTHER ALPHABET, ISOFORM E-RELATED 6 372 - -
Tsu01g01963 387 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Tsu01g01963 387 Gene3D - 20 363 IPR036457 -
Tsu01g01963 387 ProSiteProfiles PPM-type phosphatase domain profile. 53 352 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01963 Tsu-Chr1 19916287 19920133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01963 1 383 PP2C-type Phosphatase Gene Family AT5G06750 67.775 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01963 K01102 - gmx:100778238 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01963 01 19916287 19920133 Tsu01g01963 01 19916287 19920133 ECH
Tsu07g03465 07 40937605 40939542 Tsu01g01963 01 19916287 19920133 PCT