Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01956 ATGATGAATTTAAAATCTGCTGCCCCTCCTAGAAATGTTCCCGCGCCACCACCAGTTTCTAACAATGGTTCTGCACCACATGTTGTTAAAAGCCGCATATGCAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCACGGTGAATGGGAACTTGGCAAACCTTATGCTCCATCAATTGATGATCACCGTCCTATGGCACCCACAACAGTTAATCGTATGGCTGGTCGAACAGAGGCTCCTTCTGGTCTGGGCACTACTAGCTTTGGTGCCAGTTCTACTGCCAAGATCAGTGTTGAAGCTGCCTTGGCTGGAGCTATCATTGGAAAGGGTGGTGTGAACTCGAAGCAGATCTGTCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAAACTGATCCAAACCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAAGCAAGTAATATGGTAAAAGATTTACTTTTGACTCCATCAGTGTCTGCCCCACCTAAATCCACCCCAGGTGTTCCTGGTGCTGGTGCTGCTGCCCAACCTGGAAGAAACATAAAAACCAAGCTGTGTGAGAATTTCGCTAAAGGATCTTGCACATTTGGAGAAAAATGTCACTTTGCCCACGGAGCTGCTGAATTGCGCAAGCTAGGAATCTAA 684 0.4547 MMNLKSAAPPRNVPAPPPVSNNGSAPHVVKSRICNKFNSAEGCKFGDKCHFAHGEWELGKPYAPSIDDHRPMAPTTVNRMAGRTEAPSGLGTTSFGASSTAKISVEAALAGAIIGKGGVNSKQICRQTGVKFSIRDHETDPNLRNIELEGTFDQIAQASNMVKDLLLTPSVSAPPKSTPGVPGAGAAAQPGRNIKTKLCENFAKGSCTFGEKCHFAHGAAELRKLGI 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01956 227 SMART c3hfinal6 193 219 IPR000571 GO:0046872
Tsu01g01956 227 SMART c3hfinal6 30 55 IPR000571 GO:0046872
Tsu01g01956 227 SUPERFAMILY CCCH zinc finger 27 59 IPR036855 GO:0046872
Tsu01g01956 227 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 195 218 IPR000571 GO:0046872
Tsu01g01956 227 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 30 55 IPR000571 GO:0046872
Tsu01g01956 227 SMART kh_6 97 167 IPR004087 GO:0003676
Tsu01g01956 227 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 94 168 IPR036612 GO:0003723
Tsu01g01956 227 ProSiteProfiles Zinc finger C3H1-type profile. 193 220 IPR000571 GO:0046872
Tsu01g01956 227 SUPERFAMILY CCCH zinc finger 193 223 IPR036855 GO:0046872
Tsu01g01956 227 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 226 - -
Tsu01g01956 227 CDD KH-I 100 163 - -
Tsu01g01956 227 Pfam KH domain 101 163 IPR004088 GO:0003723
Tsu01g01956 227 MobiDBLite consensus disorder prediction 1 24 - -
Tsu01g01956 227 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Tsu01g01956 227 Gene3D - 191 224 - -
Tsu01g01956 227 Gene3D - 23 60 - -
Tsu01g01956 227 Gene3D K Homology domain, type 1 94 190 IPR036612 GO:0003723
Tsu01g01956 227 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 1 226 - -
Tsu01g01956 227 ProSiteProfiles Type-1 KH domain profile. 98 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01956 Tsu-Chr1 19835118 19840350 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu01g01956 KH_1 1.3e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01956 - - gmx:100817463 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01956 01 19835118 19840350 Tsu01g01956 01 19835118 19840350 ECH