Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01955 ATGGCGTCTAAAGGTCCAAGGTCTAAGGTTGATCCTGAGTATAAAGCTAAACGACAAAAGGCTGTTGAAGCTCCACGGGAGCCTAGACGACCCAAAACTCATTGGGACCATGTCTTAGAAGAGATGGTGTGGCTATCAAAGGACTTTGAGTCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAGGTTTCTTTAAAAGCCAGCAAAGGCATGTTAGATCAGGCTACAAGAGGTgaaaagaagatgaagGAAGAAGAGCAGCGGTTAAGAAAAGTTGCACTAAATATTTCCAAGGATGTTAAGaaattttggacaaaaatagAAAAGCTGGTTCTTTACAAGCATCAAATGGAACTcgatgagaagaagaaaaaggcaTTGGACAAACAGCTTGAGTTTCTTTTAGGTCAAACTGAGAGATACTCAACTATGTTGGCCGAGAATCTTGTGGATGCTCATACACCAGCAGAGAACATTTCTGCAGAGCATCACACGAGTATTCAATGCAAAGATATAGACGGAGACATTGTCAATGAACCTAAGGAAGCCATTGTTGCAGAGTATCAATCTGATGCACCTGATCACGACGAAGAATATGATGTACAATCTGATGATGTAttgGATGATGACGAGCAAACCCTCGAGGAGGATGAGGCTCTTATAACTAAAGAGGAAAGGCAAGAGGAATTGGCAGCTTTGCACAGTGAAATGGATCTTCCAATTGAGGAGTTACTCAAACGTTATTCTGGAGATAAAGGAGAATTGGCAAAGCATGAAAGTAGTCCAGAGGGTAGTGAAGATGGTGGAAAAATAGTTAGAACTGGTGATGCTATTGGTCAGGAAGAACTATTATCAGAAAATGGAGATCATATATCTATCAGAAAAATAGGTACAAACGACTCCAGCATGGTCCCTGGTCGACGTTGTgATGATAGTAATGGTGATGCAGCTACACCAACAAACAATCTATCTCAAAATGACGATCATCAATCTGAAAATCTTAAAGAGGTTCCCAGTGAGACGGCCAAAGAAAATGTTCCATTTGATTTTTCTGACGAAGAGGAAGACGGTGACTTTTTGTCTGGCACAGAGGATAAGGATGATGAAACAACCTTATCCGAGGAAGAAAAACTGGACAGAGTTGATGCAATTGATCCAAAGGATGAGATTGCATTACTACAAAAAGAGAGTGACATGCCGGTTGAGGAACTGCTTGCAAGGTATAAAAAGGACCTGAGTGACGATGAGGATCAGGAAGATGAGTCAGATTATGCTTCTGCTTCATCAGAAGACCATCAGAACTCATCAGTCCATGATGATGCTGAGCAGAAGGATCCGGCTGTTTCTGTGGATGAAGACATGAAGTCCGGTGAGCAACTGACTACCATACAGACTCAGGCAGAAGAACAGGGGGAAGCACCTTGTGAAAATTCAGAGGAAAGAGAAAGTGAGGATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCAACTGGAAACACCTTCTCCACAACTAAAGTGCGTACAAAATCCCCCTTTCTACTCAAGTACACTCTTCGTGAATATCAACATATTGGATTGGATTGGCTCGTAACAATGTATGAAAAAAAGCTGAATGGAATTTTGGCGGATGAAATGGGGCTTGGAAAAACTATTATGACTATAGCTTTGCTTGCACATCTTGCCTGTGAAAAGGGAATCTGGGGTCCACATCTAATTGTGGTGCCAACTAGTGTGATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGCGTTTAAAATTTTGACCTATTTCGGAAGTGCAAAGGAGCGAAAACATAAAAGACAAGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGATTCCAAAGTTTTCAAACGCAAAAAGTGGAAATACTTGATCTTAGATGAAGCTCACCTCATTAAAAACTGGAAATCACAAAGGTGGCAGACACTGTTGAATTTCAATGCAAAACGACGGATTCTGTTAACTGGTACACCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTGATGCCCCATGTTTTCCAGTCACACCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAAGAGGTTGTTGATCGCCTGCATAATGTCCTTCGTCCATTCCTACTCCGTCGATTAAAGAGAGATGTAGAAAAGCAACTTCCCATGAAAGTTGAGCATGTCATATACTGTAGGCTGTCAAAGAGACAGAGAAATTTGTACGAGGATTTTATTGCTAGCTCAGAGACTCAAGCTACACTTGCAAATGCCAATTTTTTTGGGATGATTGGTGTTATCATGCAACTTCGTAAGGTTTGTAATCATCCTGACCTATTTGAGGGTCGTCCAATCGTCAGTTCTTTTGATATGTGTCGGATTGATACTCAGTTAAGTTCTTCTATTTGCTCCATGCTTTTGCCTAGCTCCTTTTCAACAGTTGACTTAGAAGGTTTGGGTCTTTTATTTACTCATCTTGATTATAGCATGACTTCTTGGGAGAGTGATGAAGTGCAAGCCATTGAGACCCCTGCTACTTTAATTATGGAACGCACTGATATGGCTGACCTGGAAGTAATTAAGCCAGGACTGAAATGTCAGAAAAAGCCTCATGGAACAAACATTTTTGAAGAGATTCAAAGGGCAATTTGGGAGGAGAGGATAAGAGAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGGTGTAAAAAAAGACCCATCTACTCAACGACTCTAAGGGACATTGTTACCATAAGGCATCCTGTATATGATATTCATCAAAAGAAGGCAAACCCTGTTTCATACTTGTTCCCATCAAAACTGGCAGACATTGTTCTCTCTCCAGTTGAACGATTTCAAAGGATGATTGATGTGGTTGAAAGTTTCATGTTTGCAATTCCTGCTGCCCGAGCATCCCCTCCTGTTTGCTGGTGCAGTAAAAGCGAGACTACTGTGTTTATGAACCCATCTTACAAGCAACAATGCTCTGATATTCTGTCACCACTATTGTCACCAATCAGGCCCGCAATTGTTCGTCGGCAAGTATATTTCCCAGATAGGCGACTTATACAATTTGACTGTGGAAAATTGCAGGAGCTAGCAATTTTGCTGAGGAAATTAAAATCAGAAGGTCACCGAGCTCTGATATTCACTCAGATGACTAAGATGCTTGACATATTAGAAGCGTTCATTAACTTGTATGGTTATACTTACATGCGGTTGGATGGATCAACCCAACCAGAGGAGAGGCAGACCTTAATGCAGCGTTTTAACACAAACcccaaattttttcttttcatcttgtcAACTCGCAGTGGAGGTGTTGGTATCAATCTAGTTGGGGCTGACACGgttattttttatgatagtGACTGGAATCCTGCTATGGATCAACAAGCTCAAGACCGGTGCCACAGAATTGGCCAGACACGTGAAGTGCATATATACCGATTGATAAGTGAAAGCACCATTGAGGAgaatattttgaagaaagcAAAGCAAAAGCGAGCACTTGATGATTTAGTTATACAAAGTGGGGGTTATAATACCGAGTTCTTCAAGAAGCTTGATCCTATGGAACTGTTTTCAGGTCATAAAACACTTTCAATTAAAGACACGCCGAAGGAGAAAAACCAGAACAGTGGAGAAGTTGCTGTAACTAACGCAGATGTGGAAGCTGCATTAAAACATGTAGAAGATGAGGCAGATTATATGGCACTAAAGAAAGTTGAACTGGAAGAAGCTGTGGATAATCAAGAATTTACAGAAGAAGCCAGTGGGAGACTTGAAGAGGATGAGTATGTAAATGAGGATGATGAGCCTCAAGAATTAGGTGAATCTGTTTCCACTTTGAATAAAGAGAATACATTAGTGCTAAATGGAGCTGATCCTATGGAAGATAAACCACCCTCTGTTGTTGCCAAAGAAGATGATGTTGACATGCTGGAAGATGTGAAACAGATGGCAGAGGCTGCAGCTGCAGCTGGACAGGCTTTATCGGCCTTTGAAAATGAGCTACGCCCTATTGACCGATATGCCATTCGTTTTCTAGAGATGTGGGATCCAATTATAGATAAAGCAGCCTTGGAATCTGAAGTCAGGATTGAGGACACTGAATGGGAATTGGATCGCATTGAAAGGTATAAGGAGGAGATGGAGGCCgaaattgatgaagatgaagagccTCTTGTATATGAAAGCTGGGATGCAGATTTTGCGACAACGGCTTATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTTGAATATGAAGCTAAACTGAAAGAGgaagctgaagaagaaaaaaaCAGGACTCAGGCACCAAGTGTTTCGAAGCCCAAGCCTAAAAAGAAACCCAAGAAAGCAAAGTTCAAATCTCTGAAGAAAGGATCTTTAACCACTGGTTTAAGAACTGTGAATGATGAGCTACGAGCAGTGCCAATGGCCATAGATGATGATGTTGCCACTAGCCTTGATTTTGTGTCTCCAAGTTCGAGTATACATAAAAAGCGCAAGAAGTCTAAATTAATaactgatggtgaagaagaaaaaagatttAAGAAGTCCAAAAAGTACAAGAGGGATCCTTGTGACATTTATGATTCAGATTTAGACTCCAACTCATTAGATATGCAGCAGGATGAACATGCAGAATCAGATCCATGTAAAAGTATGGTTGTGTTGGAACAGAAAACAGTTGGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCAATGCCTGTGAAACGGGTCTTTATGATAAAATCAGAAAGATTGAAGAAGGGAAATATTTGGTACAAAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCAGTTGTTCATGAATATGGTCCTAACTGGAGCTTTGTTAGTGATATACTTCATAGCATGACTGCTGGTGGGGCATATAGGGGGATATATCGTCATCCTGTCCATTGTTGCGAGAGGTTCAGGGAATTATTCCAAAAATATGTCTTGTTCTCTATGGACAATGCAAATCATGAGAAAATCAACAATACATGCTCTGGAAAGGCTCTTAAAGTAACAGAGGATAACATTCAAATGTTGTTAGATGTTGCTTCTGAGCAGGCAAATAGAGAGTTATTACTGCAGAAGCACTTTTTTGCATTGCTTTCTTCTGTCTGGAAAGCAGCGCAAGTTGACCGTAGACAAAATCTACATGCCACTTGCAACAGTCTCTATTTCGACCAGAGTTTCTTCTCTTCAATTGGCCAGCATTCACAAAATCCCCTGAACAAACCCTCTGAAAGGATGACGTATGCTCATTCGGGCCAGAGCAAAATGTTATTGGCAGCTGCACTGGATGACTTGAAAAGTGGGCCAGAGAATGACAAAATAGTCCTCTCTAACCAGGGTAAAGACATGCCGGTGACTGAAGATCAGGTGGATATAACTCTGGAGTTCCCAAAAGAGGAAAGTGATTCCTTATCCTCATTTCCATCTGTTATTAAGTTATCAATAAAAGGGGCTGAAGCACCACCTTCTTTAAATAAGCACACAAGAAATGATCATCTTAAAAGTTGTTTCTCTGCTGCTGAGAATCGTTTCAGGGAGGTAACAAAAGCTTGTGAAGAAGACAGTTCTCGATGGGCTTCATCAGCATTCCCAACAAATGATGCAAGGTCTCGACCTGGATCCAGGGTACAATCTTCTGGAAAGCAAAGGTCTTCCATTTCCGACGTTATTAAGCCGTCTAGATCAAAGACCAAAAGACCTTCAGTGGATTCTAGTGAATTGCATCGCCATCAGACTGAGCCATTATTCCCGCCAATGCCGTCGCTTCAGGAACTGGCATCGGATCTCTCTTCATCTACTGTGGACAAATTTGGATTTGACACGGAGAGCGATTTCCCCTTTGATTTGAATGGGGAAAGTTCATTGGAAAGGGAAAATTTTGGAGTGGTCCCACATGATTATATAGCTGAGTTCATCTCAGGCCTTGATGATTGTACCACATTCCCTGAATATACTGATATTAGATAA 6147 0.402 MASKGPRSKVDPEYKAKRQKAVEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVSLKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHTPAENISAEHHTSIQCKDIDGDIVNEPKEAIVAEYQSDAPDHDEEYDVQSDDVLDDDEQTLEEDEALITKEERQEELAALHSEMDLPIEELLKRYSGDKGELAKHESSPEGSEDGGKIVRTGDAIGQEELLSENGDHISIRKIGTNDSSMVPGRRCDDSNGDAATPTNNLSQNDDHQSENLKEVPSETAKENVPFDFSDEEEDGDFLSGTEDKDDETTLSEEEKLDRVDAIDPKDEIALLQKESDMPVEELLARYKKDLSDDEDQEDESDYASASSEDHQNSSVHDDAEQKDPAVSVDEDMKSGEQLTTIQTQAEEQGEAPCENSEERESEDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNAKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKVEHVIYCRLSKRQRNLYEDFIASSETQATLANANFFGMIGVIMQLRKVCNHPDLFEGRPIVSSFDMCRIDTQLSSSICSMLLPSSFSTVDLEGLGLLFTHLDYSMTSWESDEVQAIETPATLIMERTDMADLEVIKPGLKCQKKPHGTNIFEEIQRAIWEERIREAKERAAAIAWWNSLRCKKRPIYSTTLRDIVTIRHPVYDIHQKKANPVSYLFPSKLADIVLSPVERFQRMIDVVESFMFAIPAARASPPVCWCSKSETTVFMNPSYKQQCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAKQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHKTLSIKDTPKEKNQNSGEVAVTNADVEAALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYVNEDDEPQELGESVSTLNKENTLVLNGADPMEDKPPSVVAKEDDVDMLEDVKQMAEAAAAAGQALSAFENELRPIDRYAIRFLEMWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFATTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTQAPSVSKPKPKKKPKKAKFKSLKKGSLTTGLRTVNDELRAVPMAIDDDVATSLDFVSPSSSIHKKRKKSKLITDGEEEKRFKKSKKYKRDPCDIYDSDLDSNSLDMQQDEHAESDPCKSMVVLEQKTVGRSKMGGKISITPMPVKRVFMIKSERLKKGNIWYKDCIPSADFWLPQEDAILCAVVHEYGPNWSFVSDILHSMTAGGAYRGIYRHPVHCCERFRELFQKYVLFSMDNANHEKINNTCSGKALKVTEDNIQMLLDVASEQANRELLLQKHFFALLSSVWKAAQVDRRQNLHATCNSLYFDQSFFSSIGQHSQNPLNKPSERMTYAHSGQSKMLLAAALDDLKSGPENDKIVLSNQGKDMPVTEDQVDITLEFPKEESDSLSSFPSVIKLSIKGAEAPPSLNKHTRNDHLKSCFSAAENRFREVTKACEEDSSRWASSAFPTNDARSRPGSRVQSSGKQRSSISDVIKPSRSKTKRPSVDSSELHRHQTEPLFPPMPSLQELASDLSSSTVDKFGFDTESDFPFDLNGESSLERENFGVVPHDYIAEFISGLDDCTTFPEYTDIR 2048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 314 328 - -
Tsu01g01955 2048 PANTHER HELICASE SRCAP 13 1943 - -
Tsu01g01955 2048 Gene3D - 1646 1706 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 251 455 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 1915 1951 - -
Tsu01g01955 2048 CDD DEXQc_SRCAP 521 743 - -
Tsu01g01955 2048 Coils Coil 207 227 - -
Tsu01g01955 2048 Pfam SNF2-related domain 538 810 IPR000330 GO:0005524|GO:0140658
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 1 33 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 1952 1970 - -
Tsu01g01955 2048 CDD SF2_C_SNF 1051 1186 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 349 372 - -
Tsu01g01955 2048 Pfam HSA domain 27 93 IPR014012 -
Tsu01g01955 2048 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 533 698 IPR014001 -
Tsu01g01955 2048 Pfam Helicase conserved C-terminal domain 1065 1175 IPR001650 -
Tsu01g01955 2048 SMART bromneu2 23 94 IPR014012 -
Tsu01g01955 2048 Gene3D - 490 766 IPR038718 -
Tsu01g01955 2048 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Tsu01g01955 2048 PANTHER HELICASE SRCAP-RELATED 13 1943 - -
Tsu01g01955 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 743 IPR027417 -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 1285 1312 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 1915 1983 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 1483 1499 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 1297 1311 - -
Tsu01g01955 2048 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1066 1216 IPR001650 -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 251 270 - -
Tsu01g01955 2048 Coils Coil 1453 1477 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 1468 1500 - -
Tsu01g01955 2048 Gene3D - 767 847 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 373 414 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 433 452 - -
Tsu01g01955 2048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 1253 IPR027417 -
Tsu01g01955 2048 Coils Coil 1402 1422 - -
Tsu01g01955 2048 MobiDBLite consensus disorder prediction 8 33 - -
Tsu01g01955 2048 Gene3D - 1035 1281 IPR027417 -
Tsu01g01955 2048 SMART helicmild6 1092 1175 IPR001650 -
Tsu01g01955 2048 SMART ultradead3 517 710 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01955 Tsu-Chr1 19803614 19819240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01955 541 813 RAD5 or RAD16-like Gene Family AT5G43530 29.814 9.83e-28 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu01g01955 SNF2_N 2.1e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01955 - - aprc:113871102 3159.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01955 01 19803614 19819240 Tsu01g01955 01 19803614 19819240 ECH