Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01949 ATGAATGAGAATAAGATTGATTATTTAGGAAGCATTCAACAAAACCATATTCTAAATGGTGATTTTAATTCTGAGCTAGGAAATTGTTCTAGTCAATATTTTGATATTAGAAATGCTTCAAATATTGGAAATTTTAGTCAACAACCATTTTCTATGGAACAACAATCACCATATATAGTTCAAAGTCAAAACCAAGTTCAAGGAAAATCATCATCTAATACAATTATAAGCCGTTTTGAATCACCAACTTCAGCTTTTTATGCAACTGAAATTTGCATGGGTTTTCCACAATATGATTACCAAGttggtaataataataacccTTTTTTGATATCTCAACAAATTTCTAATAAGGTTAATGATTTAGAATTTCCTTTGTATCAATGTTCAAGGGAAAATAATCTTTACCTTGattcaacaaatcaaacaactaATCATAATTTTGAGTTATCAAATTTAAACCCTTTACAACCATTGATTAGATCTCAATTAAATAGTGATCAATGTTGTAGATCTCCTGAAAAATCCAATGGTGGAAATTTTCTATTCATTGATGATGCTTCTACAATTAGTATGAGTCCATTAATTCATTCTAATGGAAATCATGATCATAAaGTTTCTTGTGGTTCATTTGATTATCCTGTTTCACAATTGAATTTCTCTTACCAGCAAGAGAAATTGTCTCCATCAATGTCAACAGGTTCTGGAAATCATGTTTCTAATGGATCATCAGTTTCAAGTAAAACAAGAATAAGATGgactcaagatcttcatgagAAATTTGTTGAGTGTGTGAATCGCCTTGGAGGCGCCGAGAAGGCAACACCAAAAGCTATATTGAGGCTGATGGAATCGGATGGGTTGACAATTTTCCATGTTAAAAGTCATTTGCAGAAATATAGAATTGCAAAATATATGCCAGAACCAGCTCAGGGGAAATCTGAGAAAAGAACTCATGTAGAGAATGTGAATCTTGATGTCAAATCTGGATTGCAAATTAGAGAGGCACTTCAACTTCAGCTAGATGTTCAGAGGCGTCTTCATGAACAACTAGAGATTCAGAGAAAATTACAGTTGAGAATTGAGGAACAAGGAAAGCAGCTTAAGATGATGTTTGACCAACAACAGAAGAGAAATAGTAGTGACCAATTGAAGACTCAAAATTTGGACAATACATCAAATAATGATAAACCAATTAGTCCTAAAGATATTGAGGTTTCAATTTTTGAAGCGTCCGAAAATAATTCCTTATTCCCTTCAAAGATAAGTTAG 1272 0.3074 MNENKIDYLGSIQQNHILNGDFNSELGNCSSQYFDIRNASNIGNFSQQPFSMEQQSPYIVQSQNQVQGKSSSNTIISRFESPTSAFYATEICMGFPQYDYQVGNNNNPFLISQQISNKVNDLEFPLYQCSRENNLYLDSTNQTTNHNFELSNLNPLQPLIRSQLNSDQCCRSPEKSNGGNFLFIDDASTISMSPLIHSNGNHDHKVSCGSFDYPVSQLNFSYQQEKLSPSMSTGSGNHVSNGSSVSSKTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRIAKYMPEPAQGKSEKRTHVENVNLDVKSGLQIREALQLQLDVQRRLHEQLEIQRKLQLRIEEQGKQLKMMFDQQQKRNSSDQLKTQNLDNTSNNDKPISPKDIEVSIFEASENNSLFPSKIS 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01949 423 MobiDBLite consensus disorder prediction 372 403 - -
Tsu01g01949 423 SUPERFAMILY Homeodomain-like 246 302 IPR009057 -
Tsu01g01949 423 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 56 423 - -
Tsu01g01949 423 MobiDBLite consensus disorder prediction 372 400 - -
Tsu01g01949 423 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 56 423 IPR044848 GO:0003700
Tsu01g01949 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 305 IPR017930 -
Tsu01g01949 423 Pfam Myb-like DNA-binding domain 252 301 IPR001005 -
Tsu01g01949 423 Coils Coil 334 354 - -
Tsu01g01949 423 Pfam MYB-CC type transfactor, LHEQLE motif 331 377 IPR025756 -
Tsu01g01949 423 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 248 303 IPR006447 GO:0003677
Tsu01g01949 423 MobiDBLite consensus disorder prediction 227 247 - -
Tsu01g01949 423 Gene3D - 247 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01949 Tsu-Chr1 19695431 19699370 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01949 240 375 G2-like Transcription Factor Family AT4G28610 60.432 7.38e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g01949 Myb_DNA-binding 1.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01949 - - gmx:102668541 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01949 01 19695431 19699370 Tsu01g01949 01 19695431 19699370 ECH