Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01948 ATGTTCTCTTCTAGTGGATCATcagtttcaaacaaaaaaagaacaatatggactcaagatcttcatgagAAGTTTGTGGAGTGTGTGAATCGCCTTGGAGGAGCCGAGAAGGCTACACCAAAAGCTATTTTAATGATGATGGCTTCAGATGGATTGACTATGTTCCATGttaaatttcatttgaaaaaatataggaTTGCAATGGCAGATCCAGCTCAGGGGGAATCTGAAAAAAGAACTCATGTAGAGAATGTGCATCTTGATGATGTCAAATCTGACTTCCAAATTAAATGGGCACCAGATGATTGGCGTCTAAATGAACAACTAGAGATTTGGAGAAAATTACAGTTGCGAATTGAGGAACAAGAAAAGAAGTTGAAGATGATGTTTGGCAAGCAGCATAGCACATGTAGTGGCCAATTGAAAAGTGCATTATAA 438 0.3333 MFSSSGSSVSNKKRTIWTQDLHEKFVECVNRLGGAEKATPKAILMMMASDGLTMFHVKFHLKKYRIAMADPAQGESEKRTHVENVHLDDVKSDFQIKWAPDDWRLNEQLEIWRKLQLRIEEQEKKLKMMFGKQHSTCSGQLKSAL 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01948 145 SUPERFAMILY Homeodomain-like 10 68 IPR009057 -
Tsu01g01948 145 Gene3D - 11 68 - -
Tsu01g01948 145 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 138 - -
Tsu01g01948 145 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 12 66 IPR006447 GO:0003677
Tsu01g01948 145 Pfam Myb-like DNA-binding domain 17 65 IPR001005 -
Tsu01g01948 145 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 4 138 IPR044848 GO:0003700
Tsu01g01948 145 Pfam MYB-CC type transfactor, LHEQLE motif 104 135 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01948 Tsu-Chr1 19692501 19694376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01948 3 135 G2-like Transcription Factor Family AT4G28610 47.887 9.64e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g01948 Myb_CC_LHEQLE 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01948 - - gmx:102668541 174.096