Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01947 ATGTACAATAATCAATGGGAATTATATGAACATCAAAGTTTTGAGCCTTACAACATAGTCACTCCTCTAGAAGCTAtaattcatgaatcaaatgcaAATGAAACTTACTATCATCGTAATATTGACATTCCTATTTGGAACAATGAATTttgcatcacaacaaaaataGACTCACCTTTTTTGCTTTGTCATGCCTCTAAAGATCAACCTACAACCTCATTTCAATTGGGTCTTGAATCTTTAATGTGTAGCAGTGATGAAGATAGTATTTCTTCTTCTGAAAAGTGTAGTACATTTTCCAAGCCAATTTGTGAGCACTCTCAATCTCCACAACAACGTAAGAAGGTGGTGGAGGCTGATTGTGCTCCGAATCAAAAGTCCCATGAAATTTCCTTTCAGAAAACTCGGTTGGACTCATGTacaaatcaagagaagaaatctTCACTTTGTGGCTTTGATTTTGCAACATTTAGCAACTCTTACTCTAAGATAACTTCAAAGGGTAACAGAAGATTAAGATGGACAAAAGAATTGCATGAGCCATTTATTATGATCGTCAACCAGCTTGGTGGTCCTCAAAAGGCAAAGCCTAAGACTATACTACAAATGATGGGTTTGGATATGCTCACCATTTCTCATGTTAAAAGTCATTTGCAgAAATATCGTTCTACATTACACACTCACAAAGCTTTGAAAGGAACATCTGAGGAAGGGAAGAGAACAGATGGGATTAATGAGCTTCAAGTCAAAATGTAA 756 0.336 MYNNQWELYEHQSFEPYNIVTPLEAIIHESNANETYYHRNIDIPIWNNEFCITTKIDSPFLLCHASKDQPTTSFQLGLESLMCSSDEDSISSSEKCSTFSKPICEHSQSPQQRKKVVEADCAPNQKSHEISFQKTRLDSCTNQEKKSSLCGFDFATFSNSYSKITSKGNRRLRWTKELHEPFIMIVNQLGGPQKAKPKTILQMMGLDMLTISHVKSHLQKYRSTLHTHKALKGTSEEGKRTDGINELQVKM 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01947 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 166 226 IPR017930 -
Tsu01g01947 251 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 31 251 - -
Tsu01g01947 251 Pfam Myb-like DNA-binding domain 172 222 IPR001005 -
Tsu01g01947 251 SUPERFAMILY Homeodomain-like 168 225 IPR009057 -
Tsu01g01947 251 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 169 223 IPR006447 GO:0003677
Tsu01g01947 251 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 31 251 IPR044848 GO:0003700
Tsu01g01947 251 Gene3D - 169 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01947 Tsu-Chr1 19687942 19689866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01947 136 239 G2-like Transcription Factor Family AT5G29000 43.269 1.07e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu01g01947 Myb_DNA-binding 3.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01947 - - mtr:MTR_1g053800 314.309