Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01945 ATGAGTTCTTGTTTTGtaccttcttcttcatcttcatcaccaccACCCAACTCATCAACCAATGAGTTTCTTGATGGCTTgaagtttggtaaaaaaatctACTTTGAAGATGCAACAAGTAGTGTTGTTGTAACAACTCAAAGTAATACTAAACCATCATCAATGGTTATGAAAAAAGGAACTCATTATCCACCTAGGTGTCAAGTTGAAGGTTGTAAAGTAGATCTGAGTGGTTCTAAAGCTTATTATTCAAGACATAAAGTTTGTTGCATGCATTCAAAATCTCCAACTGTTGTTGTGTCTGGTTTGGAGCAGAGATTTTGCCAACAGTGTAGCAGGTTTCATCAGCTTCCAGAATTCGATCAAGGAAAACGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAAAGGCGAAGAAAGCCTCAACCAAGCTCCTTTTTAACCTCGCGTTTTCCCAGACTCTCTCCATCTACTCTCGGTAACAATGGCAAAGGTGCTAACTTTCTGATGGAATGTGCTTCATACCCAAAGTTTTCTCCAAGAAATGCATTTCCAACTCCTCCCACATCCGAGCCAATTCCCGGTGATCAAACAACACAAGTTACCTGGCAGAACAACTCATCGACACCATCTGATTTTTTCCTGCAAGGAACAGACTTCCATGGTCCTACTAGACATCCTCCTCCAATGGAAAACTACAATGAAGTCACAGATTCAAGCTGTGCTCTCTCTCTTCTGTCAAACCAAACATGGTATTCTCGAAACACAACAACGCCAAATGTTGAGATGAACAACTTGTTGAATTTCAACGGTTCGCTCATGGCACAATCTCCTCAAGGTGCAGCCAATTATCAACTTGCAAATTCCTCTTGGTTTTTAAAAGGCATTGATTCTCCTAACTGTATGTCGTCCCAGGATGTTCCTGATCTCGGTCTTGGTCAAAATTCACAAGCGATTCATAGCGATCTTCGTGGTGGGCTTGATGTGTCACAAGGCAAGAGGCAATATAATTGGTCACTTTAA 1023 0.3988 MSSCFVPSSSSSSPPPNSSTNEFLDGLKFGKKIYFEDATSSVVVTTQSNTKPSSMVMKKGTHYPPRCQVEGCKVDLSGSKAYYSRHKVCCMHSKSPTVVVSGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQPSSFLTSRFPRLSPSTLGNNGKGANFLMECASYPKFSPRNAFPTPPTSEPIPGDQTTQVTWQNNSSTPSDFFLQGTDFHGPTRHPPPMENYNEVTDSSCALSLLSNQTWYSRNTTTPNVEMNNLLNFNGSLMAQSPQGAANYQLANSSWFLKGIDSPNCMSSQDVPDLGLGQNSQAIHSDLRGGLDVSQGKRQYNWSL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01945 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 2 336 - -
Tsu01g01945 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 336 IPR044817 GO:0003677
Tsu01g01945 340 Gene3D - 58 128 IPR036893 GO:0003677|GO:0005634
Tsu01g01945 340 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g01945 340 SUPERFAMILY SBT domain 65 146 IPR036893 GO:0003677|GO:0005634
Tsu01g01945 340 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Tsu01g01945 340 Pfam SBP domain 67 140 IPR004333 GO:0003677
Tsu01g01945 340 MobiDBLite consensus disorder prediction 131 162 - -
Tsu01g01945 340 MobiDBLite consensus disorder prediction 144 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01945 Tsu-Chr1 19662963 19666557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01945 27 336 SBP-box Gene Family AT2G42200 38.682 1.24e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu01g01945 SBP 7.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01945 - - gmx:100807165 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01945 01 19662963 19666557 Tsu01g01945 01 19662963 19666557 ECH
Tsu07g03441 07 40755642 40758417 Tsu01g01945 01 19662963 19666557 PCT