Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01943 ATGGCTCTCAACTCTTCTGCACGTAAGGACTTCACTGACGATGAACTTTTACGACCATTCCTCtacaacaaaattaataatataccTTTGCCCAATTATTTGAACATTATTGAATGTGATTTGTTCGGTACTATAAAAAATCCTTGGGAAATTTGGGAACAGTTTGAGGCTTCTCATTCATATTCTGGAAAAGATTTATATGTTTTCTCCATCTTAAGGAAGAAATCTGCGACAAGCACACGCGTAGTTCGCACTATTGGAAAGGGTACATGGGAAGGTGAAGACACCGGAAAAAGTATATTCGCCAAAGATACAAATCAACTTCTCGGCTTGAGAAAACGTTATCGGTTTGAGAAGAGTGACACTTATCAAGACGGTGGATGGATCTTGCACGAGTATAGCCTCGATAAATCTTTAATAACCAATCCTTCGGCCAAAAACTATGTCCTATGCAGATTTAGAAAGAATTCAAAACTGGGTTTACAAAATACAGGAACAAGAATTAATCACCAACCCAATTCACACACAATAAATTCAAGTGGCAATAATAcattgttgagaaaatatataatttatgaaGCACCAAGAAACGAATCAAACACGACAAATGTGGttaatacaaatacaaattctCAATATAAGGAAGAAAAATGTGTGGAAAATAGTTGGCAAGAGATCATCACTGTTGGACTCGAGGCTATCGCCAATTCTGAGAACAATAGTGGAATTAACAAGACCGAGGCTGTTAAATTTACTAATGAAACAGACGGCGAATTTAACAAGGAAGAACATGTTGAATGCACTATGAACATAGAAGATGATGGTGATATCATTATAatcaatgatgatgatgatgatcttaTTATGAGCAAAGAAGAAGAGGGTGGTGTCACTATGTCTTGGCCTGAGTTTTTTGCACAGGAGCTGTTAAAGAAGAACGAAGGATGCTTGATCGAAGAGGAAGATGTTCCAATGCTTTCCAATGATTATTATAAGGACttattgtttgaaaaatattaa 1020 0.3382 MALNSSARKDFTDDELLRPFLYNKINNIPLPNYLNIIECDLFGTIKNPWEIWEQFEASHSYSGKDLYVFSILRKKSATSTRVVRTIGKGTWEGEDTGKSIFAKDTNQLLGLRKRYRFEKSDTYQDGGWILHEYSLDKSLITNPSAKNYVLCRFRKNSKLGLQNTGTRINHQPNSHTINSSGNNTLLRKYIIYEAPRNESNTTNVVNTNTNSQYKEEKCVENSWQEIITVGLEAIANSENNSGINKTEAVKFTNETDGEFNKEEHVECTMNIEDDGDIIIINDDDDDLIMSKEEEGGVTMSWPEFFAQELLKKNEGCLIEEEDVPMLSNDYYKDLLFEKY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01943 339 Pfam No apical meristem (NAM) protein 12 135 IPR003441 GO:0003677|GO:0006355
Tsu01g01943 339 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 12 262 - -
Tsu01g01943 339 SUPERFAMILY NAC domain 12 155 IPR036093 GO:0003677|GO:0006355
Tsu01g01943 339 Gene3D NAC domain 12 159 IPR036093 GO:0003677|GO:0006355
Tsu01g01943 339 ProSiteProfiles NAC domain profile. 3 156 IPR003441 GO:0003677|GO:0006355
Tsu01g01943 339 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 12 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01943 Tsu-Chr1 19654524 19656720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01943 12 155 NAC Transcription Factor Family AT5G62380 32.653 1.06e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu01g01943 NAM 5.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01943 - - mtr:MTR_1g045470 313.923