Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01941 ATGGCTGAATCACTCCTCTTTGCACTTGCTGAGTCATTCATCGGGAAGATTGCTTCTCGTGCTGTTGAAGAATCTTCTCTGGCACTTGGTGTCTATGACGATCTGCAAGATATCAAAAACACCGTATCACTCATAAAAGCTGTGCTGCTGGATTCCGAGCAAAAGCAACTGAAGAATCATGAGCTTCAAGAATGGCTGCGACAGATCAAGCGCATCTTCAACAATGCCGAAGATGTAATTGACGATTTTGAGTGTGAGGCGTTAAGAAAGCATGTTGTCAACACATCAGGTAGCATTGGAAGAAAGGTACGTCGTTACTACTCAAGTTCTAATCCTCTTGTTTATCGCCTTAAAATGGCTCATCAAATCAAACATATTAAAGAGAGATTCAATAAGGTTGCTGCTGATAGGCATAACTTTGGCCTTACAATCAACGAAAATGATAATCGCGTTGTGCAAAGGCGAGAAATGACTCACTCCCAGGTTAAGGTGTCTGAAGTGATAGGAAGAGATCAcgacaaacaaaaaataattgatcTCTTATTGCTAGATGGTGGTGATACAAGTCTCTCTATTATTCCTATTGTTGGAATTGGAGGCTTGGGAAAGACTATTCTTGCAAAATATGTATTTAATGATAATAGTGTAGTTGAATCTTTTCCATTAAAGATGTGGGTATGTGTCTCTGATGATTTTGAACTGAAGCATGTGCTCGTTAAAATCCTTAACTCTTCTAGTGCTTTTGATCCCAACCAAATTCACCAagagatatttaaaaactttgatgTGGAGCAACTACAAAATCATATGAGAAACACACTTGATGGTCAAAAGTTCTTGCTTGTCTTGGATGATGTATGGAACGAGGATCGTGTCAAATGGGAAGAATTGAAAGATATACTACAAGGAGTCGCAGGTGCTGAAGGAAGTAAAGTCTTAGTGACTACACGCAGCCACACTGTAGCTAATATGATGGGTACTTCCGCTTCTCACACTTTGCAATGTCTTTCTATAGAGGATTCCTTGTCTATATTCGTCAAATGGGCTTTTAAAGAGGGTGAAGTGAAAAATTATCCAGAATTAAAGGAGATCGGAAAAGAAATTGTGAAAAAATGTGGAGGGCTTCCTTTGGCCTTAAGAACATTGGGGAGTTCATTGTTCTTAAAATTTGATATAGAAGATTGGAAGTTTGTTAGGGACAATGAGATTTGGAATTTACCACAAAAAGAGGGTGACATTTTGCCTGCTATCAAATTAAGTTATGATCAATTGCCCTCTTATTTAAAACGATGTTTCGCTTGCTTCTCTCTTTTCCGAAAGGACTttcaatttgataattttagtgTTACTATGCTATGGCATGCACATGGTTTTCTTCCATCACCAAAGAAAGGTGAAACTGTAGATGATGTTAGCAATCAACTTTTGCATGATCTTTCGTCAAGATCTTTTCTTCAAGATTTTCATGACTTGGGTAATCTTTGCATCTTTACATTGCACGATTTAGTGCATGATCTTGCAATATATGTTTCAAGAGATGAATTTCAAATGTTAAACTCCCACAATGAAGATATATCTGAGAAAGCCTTACATTtgtcattcattaaaaataatttgcttGGCCAAAGTTTAGTTCCCAGAAGTCTCAGAACAATATATTTTCCTCTAGCAGCCAATGATGAATCTTTCTTGAATACTTTGGTTTCAAGGTGCAAATACTTGCGAGTTTTGCGAATAAGTGAATCTACATATGTGACTATTCCATTTACAATTGGCAAATTAAAACATTTAAGATATCTCGATCTTAGCAATAATGCAGAATTCAAGACTCTCCCTAATTCGATATGCAAACTCCAAAATTTGCAAACTTTGCACCTTAATGGATGCACAAAGCTACAAACATTGCCCATTGGAATAGGAAACTTGATCAGCCTTCGACGACTACTTATAACCACAAAGCAATCTAATTTTCCAGACAAAGAGATTGCAAAATTGACTTCTTTAGAAATTTTATCTATCCAATCATGTGACAATTTGGAGTCATTGTTTGGAGAAATACAAATTCCTAATCTAaaatttttgtgtattttttcttgTGGGAATCTAAAGTCTCTGGCACTTAATGTTCTTCCAAACTTAGAGATTTTGATGATTGAGAATTGCAATAACTTGAAATTGTCGATAGACGATGACAACCATATCCCCAAATTAAGGTTAAGGTCACTATATTTTGAAAGTTTACCACAGTTGGTGACTTTTCCCCGATGGTTGCAAGGATGTGCGACCACATTAAAGTCCCTGACATTTGTAGATTGTGAAAATCTTGACGAGCTTCCTAAGTGGCTATCAACTCTGATTTGTCTCAAAACAATTGAAATCTCAAATTGTCCGAAGTTGCTTTCACTCCCTGATGACATGCATCGCCTCACAAACCTTGAGTATTTGAACATCGAAGATTGTGCTGGATTATGCAGAAGATACCATCCAGAAGTTGGACAAGATTGGCCAAAAATATCACACATCAAACATGTTACCATTGGAAATTAA 2547 0.3577 MAESLLFALAESFIGKIASRAVEESSLALGVYDDLQDIKNTVSLIKAVLLDSEQKQLKNHELQEWLRQIKRIFNNAEDVIDDFECEALRKHVVNTSGSIGRKVRRYYSSSNPLVYRLKMAHQIKHIKERFNKVAADRHNFGLTINENDNRVVQRREMTHSQVKVSEVIGRDHDKQKIIDLLLLDGGDTSLSIIPIVGIGGLGKTILAKYVFNDNSVVESFPLKMWVCVSDDFELKHVLVKILNSSSAFDPNQIHQEIFKNFDVEQLQNHMRNTLDGQKFLLVLDDVWNEDRVKWEELKDILQGVAGAEGSKVLVTTRSHTVANMMGTSASHTLQCLSIEDSLSIFVKWAFKEGEVKNYPELKEIGKEIVKKCGGLPLALRTLGSSLFLKFDIEDWKFVRDNEIWNLPQKEGDILPAIKLSYDQLPSYLKRCFACFSLFRKDFQFDNFSVTMLWHAHGFLPSPKKGETVDDVSNQLLHDLSSRSFLQDFHDLGNLCIFTLHDLVHDLAIYVSRDEFQMLNSHNEDISEKALHLSFIKNNLLGQSLVPRSLRTIYFPLAANDESFLNTLVSRCKYLRVLRISESTYVTIPFTIGKLKHLRYLDLSNNAEFKTLPNSICKLQNLQTLHLNGCTKLQTLPIGIGNLISLRRLLITTKQSNFPDKEIAKLTSLEILSIQSCDNLESLFGEIQIPNLKFLCIFSCGNLKSLALNVLPNLEILMIENCNNLKLSIDDDNHIPKLRLRSLYFESLPQLVTFPRWLQGCATTLKSLTFVDCENLDELPKWLSTLICLKTIEISNCPKLLSLPDDMHRLTNLEYLNIEDCAGLCRRYHPEVGQDWPKISHIKHVTIGN 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01941 848 Gene3D - 427 508 IPR036388 -
Tsu01g01941 848 Gene3D - 10 124 - -
Tsu01g01941 848 Gene3D Ribonuclease Inhibitor 543 848 IPR032675 -
Tsu01g01941 848 PANTHER OS08G0543100 PROTEIN 24 824 - -
Tsu01g01941 848 SUPERFAMILY L domain-like 499 829 - -
Tsu01g01941 848 Pfam Rx N-terminal domain 11 98 IPR041118 -
Tsu01g01941 848 CDD RX-CC_like 12 129 IPR038005 -
Tsu01g01941 848 Gene3D - 335 425 IPR042197 -
Tsu01g01941 848 Pfam NB-ARC domain 172 400 IPR002182 GO:0043531
Tsu01g01941 848 Gene3D - 148 331 IPR027417 -
Tsu01g01941 848 Coils Coil 66 86 - -
Tsu01g01941 848 Pfam Leucine rich repeat 574 629 IPR001611 GO:0005515
Tsu01g01941 848 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 434 IPR027417 -
Tsu01g01941 848 PRINTS Disease resistance protein signature 192 207 - -
Tsu01g01941 848 PRINTS Disease resistance protein signature 273 287 - -
Tsu01g01941 848 PRINTS Disease resistance protein signature 372 386 - -
Tsu01g01941 848 PRINTS Disease resistance protein signature 592 608 - -
Tsu01g01941 848 PANTHER DISEASE RESISTANCE PROTEIN RP 24 824 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01941 Tsu-Chr1 19624882 19627736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01941 193 822 WRKY Transcription Factor Family AT5G45050 24.401 3.56e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01941 - - mtr:MTR_7g078640 1142.87