Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01939 ATGaagaaatcatcatcatcttcttcttcttcacctcTTGAAAATGATCATGCACTTGCAAATGTGAAACAAGGTTCATACATTCACAAATGTGAGTTGTGTAAGAAAGTATTCATGTCCGGTAACGCTCTTGGTGGCCACAAAACCGCCCACCGCTCCTACCTTCCAACAAAGAAGAGTAATTCATGTCGTTTGTGCAACAAGGTTTTTTCATCGATCAAAGCTTTGAACGGACATATGAAATGGCATAGTAAAAAGGGTTCCAAGGGTGTTGCGTCATCTATGGACCAGCCGAATCATTTTGCTGAGAAAAGGCTTAAGCTTTTCAGCAATGTGGATGATACTGAGAAGCTTGATCATTCGATTCCTATCTCTGTGCGCGGTTTTGTTGGAAGCTACTTGCGAGCTAGACTCGTCAAGACCCAATTCGGCCTAATCTGCTTGAAAGGGCTCGGTACAAAGATACTCTGTGTTGGCGGTGTAGTTGCTGGtgtttttggaaatttttgttcTCGTGAGGCTTGGTTCGGTTGA 534 0.397 MKKSSSSSSSSPLENDHALANVKQGSYIHKCELCKKVFMSGNALGGHKTAHRSYLPTKKSNSCRLCNKVFSSIKALNGHMKWHSKKGSKGVASSMDQPNHFAEKRLKLFSNVDDTEKLDHSIPISVRGFVGSYLRARLVKTQFGLICLKGLGTKILCVGGVVAGVFGNFCSREAWFG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01939 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 29 56 IPR013087 -
Tsu01g01939 177 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 7 59 - -
Tsu01g01939 177 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 60 93 - -
Tsu01g01939 177 ProSitePatterns Zinc finger C2H2 type domain signature. 31 51 IPR013087 -
Tsu01g01939 177 SMART c2h2final6 29 51 IPR013087 -
Tsu01g01939 177 SMART c2h2final6 61 83 IPR013087 -
Tsu01g01939 177 Gene3D Classic Zinc Finger 28 83 - -
Tsu01g01939 177 SUPERFAMILY beta-beta-alpha zinc fingers 29 83 IPR036236 -
Tsu01g01939 177 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 7 59 IPR044653 GO:0003700
Tsu01g01939 177 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 60 93 IPR044653 GO:0003700
Tsu01g01939 177 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Tsu01g01939 177 Pfam C2H2-type zinc finger 63 85 - -
Tsu01g01939 177 Pfam C2H2-type zinc finger 29 53 - -
Tsu01g01939 177 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01939 Tsu-Chr1 19618157 19619681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01939 18 161 C2H2 Transcription Factor Family AT3G29340 28.804 6.19e-09 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01939 zf-C2H2_6 5.4e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01939 - - mtr:MTR_4g073310 80.1073