Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01938 ATGGTTCGTAATTGTAACTACTTCAATCTCGTCTTCGCTGTGTTCTTCGCAATTTTGATTTCTCGAGGTTTCGCATTCACTGATCCACTTGACGTCGAAGCTCTTAAGGATATGTACAGGAGCCTAAACTACCCACAAGTGCTGCAAGGATGGAACGGCGGTGATCCTTGTGAGGAGTCTTGGACGGGAGTAGCTTGTTCGGGTTCCTCGATTATACATCTCAAAATTCAAGGAATGAACCTCACCGGATCTCTTGGAGCCGCGCTGTATAATCTACAAAATTTGAAGATATTTGATGTCAGTTCCAACAGCATAATGGGTGAAATACCATATGGATTACCTCCCAATGCCACACATATAAACATGGCTTGCAACTATTTGAGCCAAAATATACCAAGTTCATTATCAAACATGAAAAGACTTAGACATCTGAATTTAAGCCACAATTTCTTATTTGGACCAATTGGCAATGTGTTCACAGGCTTAGATAATCTCAAAGAAATggACCTTTCTTATAACAATTTCACAGGAGATCTACCAAGTTCATTTGGTTCCTTGATAAACATTGAGAAATTGTTCCTGCAGAATAACAGATTTACTGGATCAGTCACATACTTGGCTGAGCTTCCACTCATTTATCTGAACATTCAAGAAAATCTGTTTAGTGGCATTCTTCCACAACATTTTCAGTCCATTCCAAACTTATGGATTGGTAGCAATATGTTCCATGCAGTGGACGGCTCTCCTCCTTGGGGATTTCCTTTGGACGGTGTACCAGTTGAACAAAATACCAGCCGCCCACCCACAACCCAGGCAAATGCCATTGAGAATTATGCTCCTCCTAAAGCAataaaacataagaagaaacgaATTGGTCTTGGAGGAATAGCTTTTATGGTTGGTGGGGGAACATTGATGGTAACAGGATTAGCGCTCTTCATTGCACTCAGTTTGAATAAATTTCACACACAGAGACCGAAGAGCTTTGTCTTCGAAAGCAACCACCTCATTCATGATTTCTTCCCCTCTTCATTTTTAATGGTTATAGAAGTCTCTCCTACGGCACAAGATGATAGCCTGCAAATCCCACCTTTCAATGCTGCATCTCTTTTGAATCCAAGACGATTACCGTCCCAGAAACATAAAAGGATGGGAGAAACGTCAAGAAGAAGTTTTTCTGAAAGAGACAAATTCACCGGAAGGACGAAGGTTTACACAGTAGCTGAGGTTCAGTTGGTTACTAACAACTTCAGTGAAGACAACCTTCTGGGAGTAGGCTCTCTTGGCCCCGTTTACAGAGCTGAGTTACCAGATAGCAAAGTTTTGGCTGTGAAGAACATCCAAATGGCAGGGATATCTTTCAGTGAAGAGGAAAAGTTCTTAGACGTGGTCTGTACCGCTTCCCGTCTGAAGCACCCCAACATCGTTGCACTTAAAGGTTACTGTTTGGAGCATGGACAACATCTTCTTGTCTACGACTATGTCAGAAATTTAACTCTAGACGATGCTCTACACAGTGCATCATACAAACCTTTATCTTGGGGACTCCGTCTACGAATTGCTATAGGTGTTGCACAAGCTCTTGACTATCTGCACTCCACGTTCTCCCCTCCTGTCACCCATGGCAACTTGAAGGCTGCCAATATTCTACTGGATGAAAATCTGATGCCTCGTGTTTCTGACTGTGGCTTGGCTATCTTAAAACCACTGACCAACACTAAAGCCAAAGCTCGGGCTTCTGAGATTGCTATTAGAGACAGTGGGTACGATTCACCTAATCATGGCCAACCGGGAATTAGCAGCACAAAGAGTGACATATTTGCCTTTGGGGTGTTGCTTTTGGAGCTGTTATCAGGAAGAAAACCTTTCGAAAGTTTTATGCCAAAGGAAGAGCAGTATCTAGCAAAATGGGCTTCATCAAGGCTTCATGATAGCGAAAGTTTGGAGCAGATGGTAGATCCAGCAATTAAAAGAACATTCTCATCTAAAGCTCTTTCTCGATATGCTGATATCATTTCTCTATGCACTCAGCCTGCAAAGGAATTCAGACCTGCAATGTCTGAAATAGTGGACTCTCTTGTATCTTTTATGCAAAAGCTCAATGCGTCAAAGAGTGCTGGTGGTGTAGCAGATGGAACTGAACTTGACCCACTTGACAGATCTTTTCGTACAACCACCTCCCGCTTTATACCTTCACCATCATTGAGCTATGTATCTGCTTGA 2223 0.4211 MVRNCNYFNLVFAVFFAILISRGFAFTDPLDVEALKDMYRSLNYPQVLQGWNGGDPCEESWTGVACSGSSIIHLKIQGMNLTGSLGAALYNLQNLKIFDVSSNSIMGEIPYGLPPNATHINMACNYLSQNIPSSLSNMKRLRHLNLSHNFLFGPIGNVFTGLDNLKEMDLSYNNFTGDLPSSFGSLINIEKLFLQNNRFTGSVTYLAELPLIYLNIQENLFSGILPQHFQSIPNLWIGSNMFHAVDGSPPWGFPLDGVPVEQNTSRPPTTQANAIENYAPPKAIKHKKKRIGLGGIAFMVGGGTLMVTGLALFIALSLNKFHTQRPKSFVFESNHLIHDFFPSSFLMVIEVSPTAQDDSLQIPPFNAASLLNPRRLPSQKHKRMGETSRRSFSERDKFTGRTKVYTVAEVQLVTNNFSEDNLLGVGSLGPVYRAELPDSKVLAVKNIQMAGISFSEEEKFLDVVCTASRLKHPNIVALKGYCLEHGQHLLVYDYVRNLTLDDALHSASYKPLSWGLRLRIAIGVAQALDYLHSTFSPPVTHGNLKAANILLDENLMPRVSDCGLAILKPLTNTKAKARASEIAIRDSGYDSPNHGQPGISSTKSDIFAFGVLLLELLSGRKPFESFMPKEEQYLAKWASSRLHDSESLEQMVDPAIKRTFSSKALSRYADIISLCTQPAKEFRPAMSEIVDSLVSFMQKLNASKSAGGVADGTELDPLDRSFRTTTSRFIPSPSLSYVSA 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01938 740 Pfam Protein tyrosine and serine/threonine kinase 421 693 IPR001245 GO:0004672|GO:0006468
Tsu01g01938 740 Gene3D Transferase(Phosphotransferase) domain 1 496 710 - -
Tsu01g01938 740 Gene3D Phosphorylase Kinase; domain 1 378 494 - -
Tsu01g01938 740 ProSiteProfiles Protein kinase domain profile. 417 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01938 740 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Tsu01g01938 740 Pfam Leucine rich repeat 158 199 IPR001611 GO:0005515
Tsu01g01938 740 PANTHER LEUCINE RICH REPEAT KINASE 2 11 707 - -
Tsu01g01938 740 SUPERFAMILY L domain-like 34 236 - -
Tsu01g01938 740 Gene3D Ribonuclease Inhibitor 29 253 IPR032675 -
Tsu01g01938 740 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE 1-LIKE PROTEIN 11 707 - -
Tsu01g01938 740 SUPERFAMILY Protein kinase-like (PK-like) 393 693 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01938 Tsu-Chr1 19596679 19602070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01938 27 740 Strubbelig Receptor Gene Family AT5G06820 55.370 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Tsu01g01938 PK_Tyr_Ser-Thr 6.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01938 - - cam:101498175 1280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01938 01 19596679 19602070 Tsu01g01938 01 19596679 19602070 ECH
Tsu07g03440 07 40745144 40752558 Tsu01g01938 01 19596679 19602070 PCT