Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01932 ATGGGATTTTCTTTAGCTATTGAAGAAGCACAACAAAAAGAACAAGATCAAAGGTTTCTAGATTCCAATAACAACATGGCTTCTTCTAGTATTATCAAAAGCACAAcaaattcaacaacaacaacaactcaacttcaatcatttcaacaacaacaaagccATCACaatcttcatcaacaacaacaacaacatcaaaatcaacatcaaaatcatcatatgCATGACCATCAAATTTCTTTTGGAATGAtgccttcttcatcttcatcctctATCCCTGGCAATTACttaAGCAAAGATTCAAGTGCTTATGATTTAGGTGAATTGGATCAagcattttttttgtatcttgATGGACAAGCACAAGCTGATCCTTCTAGTGTTCAAGATCAAAGACagaattcatcatcatcttctggAATGAGACCACCACCAACTCTTAACATTTTTCCATCTCAACCGATGCATGTAGCACCACCACCATCATCCAATTCAAAGGGTAGCATGGGATTAACCTCTCCAGAATCTAGTGGTTCAAAGAAAGCATCTCAACCGTCCATGGAGTTGGCAAACCAACGAAATGAAACCCTCTCTGCACCTGCACCACCAAAACTAGTCAAGAGAGAGAACAATCGCAAGGGTACAACTTCAAGTTCTGAACATGAAGGACCAAAAACACCAGATCCTaagACTCTGAGAAGACTTGCTCAAAATAGAGAGGCAGCAAGGAAAAGCAGGCTTAGGAAAAAGgCTTATGTTCAGCAACTTGAAACAAGTAGGATTAAGCTTAATCAGCTTGAACAAGAGTTGCAACGTGCTAGAACTCAAggtGTGTTAATGGGTGGAGGTGCAGTTTTGGGAGGAGACCAAGGAATTCCAATTTCTATGAATAGCATTAGCTCAGaGGCTGCAATGTTTGATGTGGAATATGGGAGGTGGTTAGAGGAGAACCACAGGCTAGTGTGTGAGCTCAGAGCAGCAGTTGATGAACATTTACATGAAAATGAGCTTAGGTTATATGTGGAAAATTGTTTGGCTCACTATGATCAAGTAATTAACCTAAAAGCCCTTCTAGCTAGAACAGATGTTTTCCATCTTGTTTATGGAATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGCGGATTTAGGCCATCTGAACTCATTAAGATAATTTTAAGTCAAATTGAGCCACTTACGGAGCAACAAATACTTGGAATATGTGGGTTGCAACAATCAACACAAGAGGCAGAAGAAGCACTTTCACAAGGGCTTGATGCACTCACCCAATCCCTTTCAGAGACTATAACATCAGACTCTTTGAGCTGTCCTCCTAATATGGCTAACTACATGGGACAAATGGCTCTTGCCATGAATAAGCTCTCCACTCTTGAAAGTTTTGTGAGACAGGCAGATAATCTGAGGCATCAAACAATTCATCGTCTGCATCAGCTGTTAACAACTCGCCAAGCTGCAAAGTGTTTGGTTGCAATGTCCGAGTATTTCCATCGTCTTCGAGCATTGAGTTCTCTCTGGTTGACCCGCCCTCGCCAAGAATAG 1563 0.3698 MGFSLAIEEAQQKEQDQRFLDSNNNMASSSIIKSTTNSTTTTTQLQSFQQQQSHHNLHQQQQQHQNQHQNHHMHDHQISFGMMPSSSSSSIPGNYLSKDSSAYDLGELDQAFFLYLDGQAQADPSSVQDQRQNSSSSSGMRPPPTLNIFPSQPMHVAPPPSSNSKGSMGLTSPESSGSKKASQPSMELANQRNETLSAPAPPKLVKRENNRKGTTSSSEHEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLETSRIKLNQLEQELQRARTQGVLMGGGAVLGGDQGIPISMNSISSEAAMFDVEYGRWLEENHRLVCELRAAVDEHLHENELRLYVENCLAHYDQVINLKALLARTDVFHLVYGMWKTPAERCFMWIGGFRPSELIKIILSQIEPLTEQQILGICGLQQSTQEAEEALSQGLDALTQSLSETITSDSLSCPPNMANYMGQMALAMNKLSTLESFVRQADNLRHQTIHRLHQLLTTRQAAKCLVAMSEYFHRLRALSSLWLTRPRQE 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01932 520 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 232 247 IPR004827 GO:0003700|GO:0006355
Tsu01g01932 520 Pfam Seed dormancy control 320 394 IPR025422 GO:0006351|GO:0043565
Tsu01g01932 520 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 227 271 IPR004827 GO:0003700|GO:0006355
Tsu01g01932 520 SUPERFAMILY Leucine zipper domain 229 271 IPR046347 GO:0003700|GO:0006355
Tsu01g01932 520 MobiDBLite consensus disorder prediction 123 232 - -
Tsu01g01932 520 PANTHER TRANSCRIPTION FACTOR TGA9 111 519 - -
Tsu01g01932 520 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 111 519 - -
Tsu01g01932 520 Gene3D - 228 277 - -
Tsu01g01932 520 MobiDBLite consensus disorder prediction 17 67 - -
Tsu01g01932 520 CDD bZIP_HBP1b-like 229 281 - -
Tsu01g01932 520 ProSiteProfiles DOG1 domain profile. 302 516 IPR025422 GO:0006351|GO:0043565
Tsu01g01932 520 MobiDBLite consensus disorder prediction 205 232 - -
Tsu01g01932 520 MobiDBLite consensus disorder prediction 123 145 - -
Tsu01g01932 520 Pfam bZIP transcription factor 229 267 IPR004827 GO:0003700|GO:0006355
Tsu01g01932 520 Coils Coil 248 275 - -
Tsu01g01932 520 MobiDBLite consensus disorder prediction 1 93 - -
Tsu01g01932 520 MobiDBLite consensus disorder prediction 158 197 - -
Tsu01g01932 520 SMART brlzneu 225 278 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01932 Tsu-Chr1 19505113 19513857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01932 93 520 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 63.883 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Tsu01g01932 DOG1 5.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01932 K14431 - gmx:100815176 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01932 01 19505113 19513857 Tsu01g01932 01 19505113 19513857 ECH
Tsu07g03429 07 40671709 40678666 Tsu01g01932 01 19505113 19513857 PCT