Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01921 ATGGATTCTAATACCCATCAAAGTTATCAACTCAAACAACAGAACCAACCCAATTCTGGGTTGCTTCGTTTTCGTTCTGCACCATCTTCACTTTTTACAAACCTCACACCTTCTTCTTCTGttgttgatgataataataataataaaggtagtAAACATTTTTGGGATGATGATTCTGAATCAGAGAGATTGGTTTCAAGATTTGTGAGTAACGATAATATTTCTGGTTTATCTTGTTCTAAGGAAATGAATACTGGTTATGGTGGTGGATTGCCGCCTCATTATCCTAGACATGGTTCTGCAGCTGCTACTACTTCAAGTTCTGCTATGGATGGTTCTTTTGGGTTGGGAATGGATCATGAAACATCTCATAAGAGTTTTAGTTCAAATCTTCTTAGACAGGGTAGTTCCCCTGCTGGTCTTTTCTCCAACATTTCCTTTCAAAATGGGCTTGCCACCATGAAAGGTGTTGGAAACTATACCACGGTGAATGGCAATAACGTTGAACTTAGCCCGTCGATTAACCGATTGAGCAGTCAAGTTAGCTTCCCTTCAAGAAATGGTTCTTCGTTGGGAATGTTGTCACAAATCTCTGAAATAGATAGTGAGGATATTGACGCAACTAGCCCTGATGATGGAGGTAGCAGTGGTGATACTTCACGTTATGGTTCTGGATTTCCCTATAGTTCTTGGAATGATACTCAATCATTCTCAGAAAATCTCAGTGGTTTGAAACGAGGGCGAAGCGGTAACGAAAAGATGTTTTCTGATTTTCAGAGTGGAGGACTAGGAAATCAAGTTCATACGTTATCACATCACTTGAGTTTACCGAAGACTTCATCGGAGATGATTGCTATGGAGAAGTTGTTCCAGTTTCCAGATTCTGTTCCGTGTAAAATCAGAGCGAAACGAGGCTGCGCTACTCATCCTCGAAGCATTGCTGAACGAGTAAGAAGAACTAAGATCAGTGAAAGAATGAGGAAATTACAAGAGCTTGTGCCTAACATGGACAAGCAAACTAACACATCAGACATGTTGGATTTAGCTGTTGATTACAttaaaaatcttcaaaagcaaTTCAAGTCACTAAGTGATAAAAGAGCAAACTGCAAATGTATGAGGATACAGAAGACAGATACACATCAAATTCCATGA 1155 0.3844 MDSNTHQSYQLKQQNQPNSGLLRFRSAPSSLFTNLTPSSSVVDDNNNNKGSKHFWDDDSESERLVSRFVSNDNISGLSCSKEMNTGYGGGLPPHYPRHGSAAATTSSSAMDGSFGLGMDHETSHKSFSSNLLRQGSSPAGLFSNISFQNGLATMKGVGNYTTVNGNNVELSPSINRLSSQVSFPSRNGSSLGMLSQISEIDSEDIDATSPDDGGSSGDTSRYGSGFPYSSWNDTQSFSENLSGLKRGRSGNEKMFSDFQSGGLGNQVHTLSHHLSLPKTSSEMIAMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKNLQKQFKSLSDKRANCKCMRIQKTDTHQIP 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01921 384 MobiDBLite consensus disorder prediction 1 57 - -
Tsu01g01921 384 SMART finulus 312 362 IPR011598 GO:0046983
Tsu01g01921 384 Coils Coil 353 373 - -
Tsu01g01921 384 Pfam Helix-loop-helix DNA-binding domain 311 357 IPR011598 GO:0046983
Tsu01g01921 384 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 371 IPR036638 GO:0046983
Tsu01g01921 384 MobiDBLite consensus disorder prediction 202 227 - -
Tsu01g01921 384 MobiDBLite consensus disorder prediction 1 48 - -
Tsu01g01921 384 MobiDBLite consensus disorder prediction 212 227 - -
Tsu01g01921 384 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 13 376 - -
Tsu01g01921 384 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 306 356 IPR011598 GO:0046983
Tsu01g01921 384 Gene3D - 307 380 IPR036638 GO:0046983
Tsu01g01921 384 PANTHER TRANSCRIPTION FACTOR BHLH130 13 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01921 Tsu-Chr1 19274354 19278028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01921 1 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 47.328 2.62e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g01921 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01921 - - gmx:100819605 493.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01921 01 19274354 19278028 Tsu01g01921 01 19274354 19278028 ECH
Tsu07g03411 07 40534554 40536183 Tsu01g01921 01 19274354 19278028 PCT