Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01919 atgccacTTGTTCTTCTTCACCTCTTTCTCTGTCTCTATCTCTTCATTCCCTTTACTTCATCTCTCAACTCAGATGGTCTCTCCTTACTAGCACTCAAAGCAGCAATAGACGTGGACCCCACCGGTATTCTTAACTCGTGGTCTGACTCAGTTTCCACACCTTGTAAATTTGAAGGAGTATTATGTAACAATCATGACCGAGTTACTCAACTCACTCTCACTTCAAAATCACTAACAGGTTACATACCCTCCGAGTTAGGCCATCTTACTCAACTCACTACTCTTGATCTCTCTAACAACAATTTCACCAAAACCATTCCTGAATCACTCTTTAACACTACTAATAAACTCATTATCTTAGACCTTTCTCATAATTCTCTCTCTGGTCCTCTTCCACCTTCATTTACTTCACTTAAATCGTTAATCCATTGTGATTTATCTTCTAATTTTCTTAACGGTTCTTTACCTGAGTCGTTAACTGAATTAACTGCTTTAACTGGTACTTTGAATCTTTCTATTAATAGTTTTTCCGGTGAGATACCGGCTTCTTTAGGTAATCTTCCGGTTGAAGTTAGTTTGGATCTTCGTGATAATAATCTTACTGGTGAAATTCCTCAGGTTGGGTCCTTGCTTAATCAAGGACCTACTGCTTTTTCCGGGAATCCCGGACTTTGTGGGTTTCCGTTACGGAACCTTTGTCCAGATGTCGGGGCAAAGGTTCCTGATTTTTACCCCGAAAACCCTGATCCAAACCCAAATGCGGTTCGGACTGGGGCGGTTCGGGATAATGAGAGGGAGAGGGGTGGGTTGTTTATTgttgttggtttggttttgatttgtgTTGGGACGGTGGTGGTTTTGATGTCGGTGGTGGTGTTCCGGCGTCGACGGAGGAGGTTGAATGATGGGGAAAGGGGATTTGAGAAGGGGAAGGTGGAAGGTGTTGAGGTTTTGGGTTGTGGGGAGGAGCAGAAGGGTAGATTTGTGGTGGTGGATGAAGTGTTTGGGTTTGAATTGGAGGATTTATTGAGGGCTTCTGCTTATGTGGTTGGGAAGAGTAGGAGTGGGATTGTTTATAAGGTTGTTGGTGGCGGAAAAGGATCGGTTCCGGCGACGACCGCGGTGGCTGTTCGGCGGTTAAGTGAGGGTGATGATGGAGGTTTAAGGTTCAAGGATTTTGAGTATGAGGTTGAAGCTATTGGAAGGGTGAGACATCCTAATGTTGTGCCTTTGAGAGCTTATTACTATGCTAGTGATGAGAAACTTCTCATCACTGATTTCATTCGCAATGGAAGCTTGCATACTGCTTTGCATGGCGGGCCATCCGAATCGTTGCCACCATTATCATGGGCGGCAAGATTAAAAATTGCTCAAGGATCTGCAAGGGGATTGATGTACATACACGAGTTTAGTGGTAGGAAGTATGTCCATGGCAACATAAAATCAACGAAAATACTATTGGATGACGATCTTCAACCTTACATATCTGGATTCGGTCTTACCCGTCTTTGTTTAGGTACCTTAAAATCTAACACCACATTCACACATAAGAGACAGAATTCAAACCAGTCTATTTTAGCCTCAGCAATGAGTTCAAAATTTGCTGCTTCCTCTAAGAACTACATGGCACCCGAGGTGCGTATGGTTGGTGGAAAGTTCACTCAGAAATGTGATGTGTATTCTTTTGGTATAGTGTTGTTAGAACTTTTAACAGGTCGGTTGCCGGATTTAGGACCAGAAAATGATCAGAAGGAGCTAGAGAGTTTTGTGAGGAAAGCGTTCAAGGAGGAACAACCATTGTCAGAGATTATAGATCCAACACTTCTTCCCGAGGTTAATGCTAAAAAACAAGTTGTTGCAGCATTTCATGTGGCACTGAATTGTACGGAGCTTGATCCAGAACTGCGACCGAGAATGAGAACCGTATCTGAGAGCCTTGATAACATCAAAATTCAGTGA 1959 0.4242 MPLVLLHLFLCLYLFIPFTSSLNSDGLSLLALKAAIDVDPTGILNSWSDSVSTPCKFEGVLCNNHDRVTQLTLTSKSLTGYIPSELGHLTQLTTLDLSNNNFTKTIPESLFNTTNKLIILDLSHNSLSGPLPPSFTSLKSLIHCDLSSNFLNGSLPESLTELTALTGTLNLSINSFSGEIPASLGNLPVEVSLDLRDNNLTGEIPQVGSLLNQGPTAFSGNPGLCGFPLRNLCPDVGAKVPDFYPENPDPNPNAVRTGAVRDNERERGGLFIVVGLVLICVGTVVVLMSVVVFRRRRRRLNDGERGFEKGKVEGVEVLGCGEEQKGRFVVVDEVFGFELEDLLRASAYVVGKSRSGIVYKVVGGGKGSVPATTAVAVRRLSEGDDGGLRFKDFEYEVEAIGRVRHPNVVPLRAYYYASDEKLLITDFIRNGSLHTALHGGPSESLPPLSWAARLKIAQGSARGLMYIHEFSGRKYVHGNIKSTKILLDDDLQPYISGFGLTRLCLGTLKSNTTFTHKRQNSNQSILASAMSSKFAASSKNYMAPEVRMVGGKFTQKCDVYSFGIVLLELLTGRLPDLGPENDQKELESFVRKAFKEEQPLSEIIDPTLLPEVNAKKQVVAAFHVALNCTELDPELRPRMRTVSESLDNIKIQ 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01919 652 Gene3D Ribonuclease Inhibitor 19 79 IPR032675 -
Tsu01g01919 652 Gene3D Ribonuclease Inhibitor 80 239 IPR032675 -
Tsu01g01919 652 Pfam Protein tyrosine and serine/threonine kinase 351 646 IPR001245 GO:0004672|GO:0006468
Tsu01g01919 652 Gene3D Transferase(Phosphotransferase) domain 1 428 652 - -
Tsu01g01919 652 Pfam Leucine rich repeat 91 149 IPR001611 GO:0005515
Tsu01g01919 652 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Tsu01g01919 652 ProSiteProfiles Protein kinase domain profile. 344 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01919 652 PANTHER RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1 1 652 - -
Tsu01g01919 652 SUPERFAMILY L domain-like 24 231 - -
Tsu01g01919 652 Gene3D Phosphorylase Kinase; domain 1 315 427 - -
Tsu01g01919 652 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 1 652 - -
Tsu01g01919 652 ProSiteProfiles Leucine-rich repeat profile. 91 113 IPR001611 GO:0005515
Tsu01g01919 652 SUPERFAMILY Protein kinase-like (PK-like) 349 646 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01919 Tsu-Chr1 19258642 19262752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01919 22 650 Receptor kinase-like Gene Family AT3G57830 58.050 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu01g01919 PK_Tyr_Ser-Thr 6.7e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01919 - - gmx:100796011 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01919 01 19258642 19262752 Tsu01g01919 01 19258642 19262752 ECH