Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01916 ATGGAACAAACCACACTCGAATCGATTCAATTTAACGAAGAAATTCAAGGAATCATGGCTCCGGCATCAGAAACCTCGAACTCTTTCACCGCACTTCTCGAACTACCTCCGACGCAGGTCGTTCAGCTTCTTCACTCGCCGGAGATTACCGGAAAACCGCCGAAACCCTATCCACTAACTTCCAACACCACCGCAAGATTCTCTGTGTTCGCCGGAGAGAACAAGAACTCAGCGAATTTGAACGTTAACTCGGTGCTTCCGGAGGTTAAGGATGAGCTACCGGAGACTGAAGGAGGTGGATGTGTCTCTgatccaacaatcgagaacaaGAAATCCAAAGGTGCGAAGAGGAAAGAGCGAGAGAAGAAGGTTAAAGTGTCGTCTAAGAAAAGTAAAAGTATCGCCGATGAGAATTCCGGCAACGGCGGCGATGAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGGgCTAGGAGAGAGAAGATAAATGCACGTATGAAACTGTTGCAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACAGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTACAGCACGAAGTGGAGATTTTATCAATGAAACTAGCAGCAGTTAACCCGATAATTGATTCCAACCTTGAAAGCATATTGGCTACAGAAGGTTTGTCTCCCATGGCCAGTAACTTCCCTGCTACAGTTGCACCCGTTGTGTGGCAGGAAATCCCTCACAATGAAAACAGACAGCAATTTCAGCAACCGTGGCAATCCGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAAACAACCCTAATTTCTTGACCCCAGAAAACTCACTGTTGAGTTATGACTCATCGGCAAATTCAGTTTCTCTGCACTCAAATCAGATGAAGATGGAGCAATGA 954 0.456 MEQTTLESIQFNEEIQGIMAPASETSNSFTALLELPPTQVVQLLHSPEITGKPPKPYPLTSNTTARFSVFAGENKNSANLNVNSVLPEVKDELPETEGGGCVSDPTIENKKSKGAKRKEREKKVKVSSKKSKSIADENSGNGGDELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPIIDSNLESILATEGLSPMASNFPATVAPVVWQEIPHNENRQQFQQPWQSDAFHQPLWGREENNPNFLTPENSLLSYDSSANSVSLHSNQMKMEQ 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01916 317 MobiDBLite consensus disorder prediction 89 146 - -
Tsu01g01916 317 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Tsu01g01916 317 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
Tsu01g01916 317 SMART finulus 163 213 IPR011598 GO:0046983
Tsu01g01916 317 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 224 IPR036638 GO:0046983
Tsu01g01916 317 Gene3D - 154 227 IPR036638 GO:0046983
Tsu01g01916 317 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 316 IPR024097 GO:0006355
Tsu01g01916 317 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 316 - -
Tsu01g01916 317 CDD bHLH_AtBPE_like 147 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01916 Tsu-Chr1 19232834 19238149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01916 2 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 46.448 4.09e-76 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g01916 HLH 3.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01916 - - aprc:113872810 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01916 01 19232834 19238149 Tsu01g01916 01 19232834 19238149 ECH
Tsu07g03409 07 40496453 40502613 Tsu01g01916 01 19232834 19238149 PCT