Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01912 ATGGATGGTACTCAAGATATGTCATGTAACAATGGTGCAATCACAAGCAGTGTTCCAATTGATCAGTCACATGATGAGGTCGGTTTTCAAAGTTTTGGAAATGATGAAATGAGAAACATAGCTCAAGATCATACCTATTCAATGTTGAGTTTTGTTGATGGAAGTGAATTATTTAAATTTGCTCAATTGATGGAGATTAATCCCAGTCGGGAAAGGTATAGTGATAATCATTATGAAGCATTTCTTTGGGAGCACAACACTAGAAGGAGTGGGAGAGGCAAGAGAGGACGATTTCAAACTGAAGTACAAGCAGCCATAGCTCATGATTTAATCGCTATTAAGACATGGGGTCAATCTACACTTACAAATTTCCCgGTGACTGGTTACTCAAAGCAAATCTCACAAATGAAAAGTATGAACAAAGATCAGTTGATTTTTAATATTACAAAGACCTCAAAGAAGACTGATATTGAGTACGTGCGTGTCTCAAGACTTGATGGAGATAAATGGGAAGTGAGATTGGAAAATGCAAATGGGAGGCCAAGCTATTACTTGGGATTATTTGaCACTAAGGAAGAAGCTACCAGAGCATATGAGGCAGCaacaaagaaattgaaagaagaggATGTGTCCACTAATATTGATTCCAATAATTACCGTAATGTTATGCGACCCGTGCAAATACGCAACATTTTTACCGGTGGTAATGAAAGTAAGTCAAGAGGCATGCAAAGTTCGAATCAACGTGATGTTGATATGTTTCATGAGCACCAATATCGTCGTCATCTTTTACATCAACATGATGACATGAACTCATCAGCTCCAATCATACTTTATGATTTTAGTAATCATTCAGTTTATGAAGTTGGAAAAGATGGATATGGGAGCCATGCATATTATCATCCAACCAATAATATTGGAAATTCTTCAAACCAATGA 939 0.361 MDGTQDMSCNNGAITSSVPIDQSHDEVGFQSFGNDEMRNIAQDHTYSMLSFVDGSELFKFAQLMEINPSRERYSDNHYEAFLWEHNTRRSGRGKRGRFQTEVQAAIAHDLIAIKTWGQSTLTNFPVTGYSKQISQMKSMNKDQLIFNITKTSKKTDIEYVRVSRLDGDKWEVRLENANGRPSYYLGLFDTKEEATRAYEAATKKLKEEDVSTNIDSNNYRNVMRPVQIRNIFTGGNESKSRGMQSSNQRDVDMFHEHQYRRHLLHQHDDMNSSAPIILYDFSNHSVYEVGKDGYGSHAYYHPTNNIGNSSNQ 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01912 312 SUPERFAMILY DNA-binding domain 162 215 IPR016177 GO:0003677
Tsu01g01912 312 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700|GO:0006355
Tsu01g01912 312 Gene3D AP2/ERF domain 158 216 IPR036955 GO:0003700|GO:0006355
Tsu01g01912 312 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Tsu01g01912 312 ProSiteProfiles AP2/ERF domain profile. 62 125 IPR001471 GO:0003700|GO:0006355
Tsu01g01912 312 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g01912 312 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 72 219 - -
Tsu01g01912 312 SUPERFAMILY DNA-binding domain 73 126 IPR016177 GO:0003677
Tsu01g01912 312 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM ISOFORM X1 72 219 - -
Tsu01g01912 312 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Tsu01g01912 312 SMART rav1_2 70 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01912 Tsu-Chr1 19210927 19216057 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01912 69 254 AP2-EREBP Transcription Factor Family AT3G20840 32.500 1.18e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01912 - - han:110927116 112.849