Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01908 atgggtAAGACGAAAAAGAAGAGAAGTAGGGTTTCCGTTTCCGACGACGATGATGAAGAAATCGGATCtgataataatatcaataacgACGCTTCcgatcaaaaccaaaactcccTCTACCAGGTTCTTGGTGTGGACAAAACAGCATCTCAACAAGAAATAAAGAAAGCATATCACAAATTAGCGTTGAGACTTCATCCTGATAAGAATCCTGGTGATGAGGAAGCTAAAGCCAAGTTTCAACAATTGCAAAGTGTTATCTCAATTCTTGGAGATGAACAAAAACGGGCAGTGTATGATCAGACTGGTTCTGTTGATTGTGCTGACCTTGGAGGAGATGTTGTCCAGAATCTTCATGAATATTTCAGAACAATGTACAAGAAGGTTACTGAAGCTGATATTGAAGACTTTGAAGCAAACTATAGGGGATCTGACTCTGAGAAAAATGATTTGATTAATCTTTACAAGGAATGCAAGGGTAATATGAAGAGGTTATTTTGTTCAATGCTTTGTTCGGATGCTAAGCTCGACTCACACCGGTTCAAGGATATTATTGATGAGGCTATAGTTTCTGGAGAACTAAAGGAAAAGAAAGCCTACAAGAAATGGGCGAAGAAAATTTCCGAAACCAAGCCACCAACTAGTCCTTTAAGGAGGGCAAAAGCAAATAAGGAACCAAAAACAGATTTGTATGCTATCATATCAAAACGACGAGATGAGAGGAAAGATCGGTTTGATTCTATGTTCTCATCTCTAATTTCAAAATATGGTGGAGGCCATGTGCCAGAACCCTCTGAAGAGGAATTTGAAGCAACACAGAAAAAGATGGAAAGCCGAAGATCCTCAAAAAAGCAAAGGCGAAAGTAA 867 0.3714 MGKTKKKRSRVSVSDDDDEEIGSDNNINNDASDQNQNSLYQVLGVDKTASQQEIKKAYHKLALRLHPDKNPGDEEAKAKFQQLQSVISILGDEQKRAVYDQTGSVDCADLGGDVVQNLHEYFRTMYKKVTEADIEDFEANYRGSDSEKNDLINLYKECKGNMKRLFCSMLCSDAKLDSHRFKDIIDEAIVSGELKEKKAYKKWAKKISETKPPTSPLRRAKANKEPKTDLYAIISKRRDERKDRFDSMFSSLISKYGGGHVPEPSEEEFEATQKKMESRRSSKKQRRK 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01908 288 SUPERFAMILY Chaperone J-domain 37 113 IPR036869 -
Tsu01g01908 288 MobiDBLite consensus disorder prediction 25 39 - -
Tsu01g01908 288 ProSiteProfiles dnaJ domain profile. 38 103 IPR001623 -
Tsu01g01908 288 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 1 288 IPR042977 -
Tsu01g01908 288 PRINTS DnaJ domain signature 40 58 IPR001623 -
Tsu01g01908 288 PRINTS DnaJ domain signature 58 73 IPR001623 -
Tsu01g01908 288 PRINTS DnaJ domain signature 75 95 IPR001623 -
Tsu01g01908 288 PRINTS DnaJ domain signature 95 114 IPR001623 -
Tsu01g01908 288 Gene3D DnaJ domain 22 112 IPR036869 -
Tsu01g01908 288 MobiDBLite consensus disorder prediction 210 233 - -
Tsu01g01908 288 Pfam DnaJ domain 39 100 IPR001623 -
Tsu01g01908 288 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 1 288 - -
Tsu01g01908 288 MobiDBLite consensus disorder prediction 261 278 - -
Tsu01g01908 288 MobiDBLite consensus disorder prediction 255 288 - -
Tsu01g01908 288 SMART dnaj_3 37 95 IPR001623 -
Tsu01g01908 288 MobiDBLite consensus disorder prediction 218 233 - -
Tsu01g01908 288 MobiDBLite consensus disorder prediction 1 39 - -
Tsu01g01908 288 CDD DnaJ 40 92 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01908 Tsu-Chr1 19187418 19191649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01908 40 100 C2H2 Transcription Factor Family AT1G74250 42.424 2.08e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01908 K09529 - gmx:100781463 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01908 01 19187418 19191649 Tsu01g01908 01 19187418 19191649 ECH
Tsu07g03398 07 40410190 40412880 Tsu01g01908 01 19187418 19191649 PCT