Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01907 ATGGATGATTATGAGGTTGTTGAGAAACTTGGTAGAGGACCTTTAGGTGCAACTTTTCTTGTTCTTCATAAGACCGACAGAAAGAGGTATGTGTTAAAGAAGATTCGATTGGCCAAGCATACAGAGAAGTCGAAATTGACAGCATACCAAGAGATGGACCTGATAGCACAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACTATATATACATTATAAGCGGCTATTGCGAAGGAGGTGACATGGCTGAGAATATAAAGAAATCTCGAGGATCTTTTTTTCCAGAGGAGAAAGTCTGCAAATGGATGACTCAATTGTTGCTAGCTGTAGACTACCTGCACTCTAACCGTGTGCTCCACAGAGATCTTAAGTGTTCCAACATATTCCTCAGCAAAGAAAACAACATTCGTTTAGGTGACTTTGGTCTTGCGAAGCTACTTAACGCAGATGATCTTGCTTCTTCGGCTGTTGGAACTCTAAATTACATGTGTCCCGAGATCTTTGCGGATATGCCATATGGTTATAAATCTGACATATGGTCGCTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAGCCGGCATTTCGTGCTCCAGATAGGGCTGGacttatcaataaaataaatagatccACCATTTCTCCGATGCCAATTGTTTACTCTTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCTGAACACAGACCAACAGCAGCTGAATTGTTGAGACATCCTCATTTACAACCTTTTGTTCTCCGCTCTCGTAATGCACCATCGGTTTTTCTTCCAGTACATCTCATAAGTTGTGACTCACCGAAAAAATCTTACAAATCTTCTGGTGGCAATGACAATAGGGACAAAGAAGAAGGATTAGTAAACCATTTGGAGCATGTTTATCCGTTTGAGGTAAATGGAGATGTACAGAcaagaaaaagatcaaatggtCGCAAACTAGCAGTGTCAAAAAGCACAGAAGACAACCTTGAGACTAAAATGGTTGATCCTACTAGCTACACATTGGAGTTCTCTACTAGTATTAGTGGCTCAAAAGACGAGTCAACAACATCTGAATCAACCGTTTGCAGCGTGTGCAAGGAAGTAGACTTCAAAAGTAGAGCTGCAAGAGGTATGACTGAAAGTGAGATCACTTCAAAGAGTACCCTAGATTCTGCGCATGAAAAGCAAGTATTTGCTACTGAAAATTTTCAGAAGTCGTATGCAGTTGACATAAATGCCGtgactaaaaaaattgaagatacTTTTTCCAATGAAGAAAGCAGTGGCAATGATAAAGATGCGTCCACCAGTGATGAGGTCACATCACAATGTACTCGAGATACTCTGGATGTAGAACAAAGATTTACTGTTGAACATTTTCAGAAGAGTGATTCAATTGACATAAATGCATTAACTAGAGAagacaaatataaatttttcaataaagGTTTTGATAAAGCTCAATCACAGAGAGAAAATGTGAAACCTGAGGACTTAGTTAAATCGATATTGTCCAGTAAAGATAGAACTGGCATTGATATAAATGGATCCATTGATGAGGTCACTTCAGAAAGTACACTAGAGTTTTTGCTTGTAGAACAATTTATTACTGAACATTTTCAGAATCCTAATGCATTTGACATAAATGCAGTGACAACAGAAGTTGAAGGTACTTTTTCCGAAGGTTGTTTTGATACTTTTTCCGAATGTGATTTTGATGCTTTTTCTGAAGCACCGAGAGAAGATGCTAAACCTGAGGACTCAAGTAAATCAATCATTTACAGGAAAGACTGGAACGTAAATGATAAAGAACCCAGTGATGATATCACTTCAAAGAGCACACCTGATTCTGTACATGTAGAACAGGAATTTGCCACCGAGAATTTTCAGACCTCAAATACAATTGACATAAATACAGTTACAAAGGTTGATGATACTCTTTCCAGTGAAGGTTTTGACACCGAGAATTTTCAGAACTCAAATACAATTGGCATAAACACAGTGAATACAGAAGTTGAGGATACTCTTTCCAGTGAATGCTTTGATAAAGCTGTAGCACAAAGAGAAGATGCCAAACCCGAGGACTCAAGTAAACCAATCATTTACAGCAAAGACTGCAACGGAGATGATAAAGAACGGTCCATCGATGATAATGCTTCAAAGAGCACACTGGATTCTGTGCATGAAGCACATGAATTTGCtgctgaaaactttccgaagtCAAATACAATTGACAGAAATGCAGCGACTACAAAAGTTGATGATAAAGTTGAAGCAGAAAGAGAAGATGTCAAACCTGAGGACTTGAGTGAATCAAATATTTACAGCGAAGACAACAACAAGGAAGAGTCTATTGATGAGATCACATCAAAGAGCACGCTGGATTCATCTAATGAAGAAACACAATTTGCTGCTGAACACTTTCAGAAGCCAGATACAATTGGCATAAATGCAGTGACTACAAAAGTCGATGATACTCTTTCCAGTGGAGGTTGTGATAAAGCCGAAGCACAAAGAGAAGATGTTCAACCCGAGGACTCAAGAAAATCACTCATATACGGCAATGGCAATGACAAAGAAGTGTCGATTGATGAGATCACATCAAACACCACACTGGATACATTGCATGAAGAACAGCAAGTTTCTGCCGAACACTTTCAGAAGCCAAATACAATTGACATAAATGTGGTCACTACAAAAGTCGATGATAATTCTTCCAATGATGGTTTCGATAAAGCCGAAGCACAGAATGGAAATTCCAACCCTGACAGCCCTAGTAAATCTATAGTGTCCAGTGAAGACAAAAGTGACAATGATAGAGTTGGTTTCATTGATGAGGAAAAAACATCACCTGCTAGGGTTGAACAAGACACTGGTACTGTAAACTGCTTGAAGGAAAGTAAAAACTCTGAAGCATTTACACCAAATGGTGATAATAATGACATCGTGGTTGATAAGACACCAAATGAAATTTCCTTAAGCACAAACAATTCAGTAGGTGGTGATAAAACAAAGAGGGTGTTGAATAATTCCGGCCAACAAAGAGCCGATGCTTTGGAGTCTCTACTTGAGTTATGTGCTCATTTACTTAAGCAAGGAAAGCTTGAAGAGCTTGCTGCAGTGCTAAGACCGTTTGGAGAAGACACAGTTTCATCCAGAGAAACAGCTATATGGCTGACAAAAAGCCTCATGTCGTCACAAAAATTTAATCCGGAAACCTAG 3252 0.381 MDDYEVVEKLGRGPLGATFLVLHKTDRKRYVLKKIRLAKHTEKSKLTAYQEMDLIAQLNYPYIVEYKDAWVEKEDYIYIISGYCEGGDMAENIKKSRGSFFPEEKVCKWMTQLLLAVDYLHSNRVLHRDLKCSNIFLSKENNIRLGDFGLAKLLNADDLASSAVGTLNYMCPEIFADMPYGYKSDIWSLGCCMFEIVAHQPAFRAPDRAGLINKINRSTISPMPIVYSSTLKQLIKSMLRKNPEHRPTAAELLRHPHLQPFVLRSRNAPSVFLPVHLISCDSPKKSYKSSGGNDNRDKEEGLVNHLEHVYPFEVNGDVQTRKRSNGRKLAVSKSTEDNLETKMVDPTSYTLEFSTSISGSKDESTTSESTVCSVCKEVDFKSRAARGMTESEITSKSTLDSAHEKQVFATENFQKSYAVDINAVTKKIEDTFSNEESSGNDKDASTSDEVTSQCTRDTLDVEQRFTVEHFQKSDSIDINALTREDKYKFFNKGFDKAQSQRENVKPEDLVKSILSSKDRTGIDINGSIDEVTSESTLEFLLVEQFITEHFQNPNAFDINAVTTEVEGTFSEGCFDTFSECDFDAFSEAPREDAKPEDSSKSIIYRKDWNVNDKEPSDDITSKSTPDSVHVEQEFATENFQTSNTIDINTVTKVDDTLSSEGFDTENFQNSNTIGINTVNTEVEDTLSSECFDKAVAQREDAKPEDSSKPIIYSKDCNGDDKERSIDDNASKSTLDSVHEAHEFAAENFPKSNTIDRNAATTKVDDKVEAEREDVKPEDLSESNIYSEDNNKEESIDEITSKSTLDSSNEETQFAAEHFQKPDTIGINAVTTKVDDTLSSGGCDKAEAQREDVQPEDSRKSLIYGNGNDKEVSIDEITSNTTLDTLHEEQQVSAEHFQKPNTIDINVVTTKVDDNSSNDGFDKAEAQNGNSNPDSPSKSIVSSEDKSDNDRVGFIDEEKTSPARVEQDTGTVNCLKESKNSEAFTPNGDNNDIVVDKTPNEISLSTNNSVGGDKTKRVLNNSGQQRADALESLLELCAHLLKQGKLEELAAVLRPFGEDTVSSRETAIWLTKSLMSSQKFNPET 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 940 963 - -
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 744 868 - -
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 314 343 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 901 956 - -
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 696 727 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 476 562 - -
Tsu01g01907 1083 CDD STKc_Nek 3 258 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 555 651 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 963 1065 - -
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 320 340 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 482 - -
Tsu01g01907 1083 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 800 814 - -
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 913 939 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 768 824 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 653 760 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 824 903 - -
Tsu01g01907 1083 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01907 1083 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 768 824 - -
Tsu01g01907 1083 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01907 1083 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Tsu01g01907 1083 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tsu01g01907 1083 SUPERFAMILY Protein kinase-like (PK-like) 1 281 IPR011009 -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 1 482 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 476 562 - -
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 759 799 - -
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 432 453 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 653 760 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 824 903 - -
Tsu01g01907 1083 MobiDBLite consensus disorder prediction 913 968 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 901 956 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 555 651 - -
Tsu01g01907 1083 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 963 1065 - -
Tsu01g01907 1083 Gene3D Transferase(Phosphotransferase) domain 1 84 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01907 Tsu-Chr1 19168731 19176832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01907 4 259 MAP Kinase Kinase Kinase AT3G13530 31.128 1.01e-32 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tsu01g01907 Pkinase 3.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01907 K08857 - gmx:100818558 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01907 01 19168731 19176832 Tsu01g01907 01 19168731 19176832 ECH
Tsu07g03397 07 40402901 40407271 Tsu01g01907 01 19168731 19176832 PCT