Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01902 ATGGCAGACCCTTATTCTCATTTTTTCTCATCAAATTTCTTTcaattcaataataataatccaaataatcataatcataattcatCACACCATTACCCTTCTTCAAACCCTTCACCCCACCACCATAATCATCTTCACAATTTCATCAACCACACAACTTTTAACAACACTAACACCAACACTTTTTTCCACtaccatcatcatcttcatcaccttCAAACATCaacaacttcttcttcttcatattcttcaCCTTCTTCCCCTCCTCTAAAAGAAGCCCTTCCACTTTTAAGTCTAATCCCTACAAAACAAGAAGAATATGATGTCTTagaacaacatcatcatcatcttcatcatgatGAATCTTGCACTTTAATGGAAGTGGAGGATTGTaggtataataataataaagtagaGGATGATGAAAGTGTGACTGTTGCACTTCATATAGGGTTACCAAACCCTAGTGCTGCTGAAATTGCAACTATGATGATGTCTTCATCATCTAATTCTGAGATGATGAATAATGAAAGAGATAATAATCAATTATTACAAGGAGATGTTATAAGTGAAGAATCAGGTTTATTGAGTAGTAATAGATCACAAATCAATAAGGGTCAGTATTGGATCCCTACACCTTCTCAGATACTCATTGGTCCTACACAGTTCTCTTGTCCTGTTTGCTGCAAAACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGCCCCGAATCTCTTCGAGGTACACAACCAACAGGTATGCTAAGGCTTCCTTGTTATTGTTGTTCGCCAGGTTGCCGGAACAACATCGATCATCCAAGAGCGAAGCCGTTGAAAGATTTTAGAACACTTCAAACAcattacaaaagaaaacatGGAATTAAGCCTTTCATGTGTAGAAAATGCGGTAAGGCTTTCGCGGTTAGAGGAGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGTTTATGTGGCTCTGATTTTAAGCATAAGAGATCACTAAAGGATCATATAAGAGCTTTTGGAAGTGGTCATGCTGCTTATGGAATTAATGGTTTTGAAGAAGAGGATGAACCTGCTTCTGAAGTTGAACAAGATAATGATTCCACTCAGACTCAGTAG 1161 0.3342 MADPYSHFFSSNFFQFNNNNPNNHNHNSSHHYPSSNPSPHHHNHLHNFINHTTFNNTNTNTFFHYHHHLHHLQTSTTSSSSYSSPSSPPLKEALPLLSLIPTKQEEYDVLEQHHHHLHHDESCTLMEVEDCRYNNNKVEDDESVTVALHIGLPNPSAAEIATMMMSSSSNSEMMNNERDNNQLLQGDVISEESGLLSSNRSQINKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCLCGSDFKHKRSLKDHIRAFGSGHAAYGINGFEEEDEPASEVEQDNDSTQTQ 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01902 386 Gene3D Classic Zinc Finger 284 358 - -
Tsu01g01902 386 MobiDBLite consensus disorder prediction 367 386 - -
Tsu01g01902 386 SMART c2h2final6 223 245 IPR013087 -
Tsu01g01902 386 SMART c2h2final6 307 327 IPR013087 -
Tsu01g01902 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 307 327 IPR013087 -
Tsu01g01902 386 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 18 383 - -
Tsu01g01902 386 MobiDBLite consensus disorder prediction 19 45 - -
Tsu01g01902 386 SUPERFAMILY beta-beta-alpha zinc fingers 289 327 IPR036236 -
Tsu01g01902 386 Gene3D Classic Zinc Finger 222 245 - -
Tsu01g01902 386 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 250 IPR013087 -
Tsu01g01902 386 PANTHER ZINC FINGER PROTEIN WIP2 18 383 IPR043584 GO:0003700|GO:0010468
Tsu01g01902 386 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01902 Tsu-Chr1 19126320 19129498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01902 1 386 C2H2 Transcription Factor Family AT3G57670 58.477 6.36e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01902 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01902 - - qsu:112003411 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01902 01 19126320 19129498 Tsu01g01902 01 19126320 19129498 ECH
Tsu07g03396 07 40368667 40371151 Tsu01g01902 01 19126320 19129498 PCT