Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01885 ATGGCTGAATCACTCCTCTTTGGTCTTGCTGAATCATTCATCGGTAAGATTGCTTCTCGTGCTGTTGAAGAAGCATCTCTTGCCCTTGGCGTCTATGACGAACTACAAGATATCAAAAACACTGTATCACTCATCAAAGCTGTGCTCCTAGATGCCGAACAAAAGCAGCGGCAGAATCATCAACTCCGTGAATGGCTGCGACAGATCAAGAGTGTCTTCACTGATGCAGAAGACATAATTGACGATTTTGAGTGTGAGGCGTTAAGAAAGCATGTTGCCAACACTTCAGGTAGCATTGGAAGAAAGGTACGTCGTTACTGCTCAAGTTCTAATCCTCTTGTTTATCGCCTTAAAATGGCTCATCAAATCAAACATATAAAAGAGAGATTCAATAAGGTTGCTGCTGATAGGCGTAATTTTAAACTTCAAATCAATGAAAGTGATAACCGCGTTGTGCAAAGGCGGGAAATGACTCATTCCCATGTAAATGAGTCTGATGTGATAGGAAGGGAACTcgacaacaaaaaaatcattgatCTCTTATTTCAAGATGATGGTGGTGATAAAAGTCTCTCTGTTATTCCTATTGTTGGAATTGGAGGCTTGGGAAAGACTACTCTTGCAAAATGTGTATTTAATGAAAAGATTGTAGTTGAGTCTTTTCCGTTGAAGATGTGGGTATGTGTCTCTGATGATTTTGAACTTAAGAATGTGCTCATTAAAATCCTCAACTCTGCTAGTGTTTCTAATTCCAACCCAATTCACCAAGAAAACTTTGATGTGGAGCAACTACAAAATCATCTAAGAAACAAACTTGTTGGTCAAAAGTTCTTGCTCGTCTTGGACGATGTATGGAATGAGGATCGTGTCAAATGGAAAGAATTGAAAGATATAATACAAGGAGTCGCAGGTGCTGAAGGAAGTAAAGTCTTAGTGACTACACGCAGCCACATTGTAGCTAATGTGATGGGTACCACCTCGTCTCACAATTTGCAAGGGCTATCCAGTAAGGATTCCTTATCTGTATTTGTCAAATGGGCTTTTAAAGAAGGAGAAGTGAAAAATTATCCAGAATTGATGGAGATTGGAAAAGAAATTGTGGAAAAATGTGGAGGGCTTCCTTTGGCCTTAAGAACATTGGGGAGTTCATTGTTCTTAAAAGTTGATATAGAAGATTGGAAGTTTGTTAGGGACAATGAGATTTGGAATTTACCACAAAAAGAGGGTGATATTTTGCCTGCTATCAAATTAAGTTATGATCAATTGCCTTCTTATTTAAAATCATGTTTTGCTTGTTTCTCCTTCTTTGAAAAGGACTGTGGACTTACTAATTTTAGAGTTACTGTGTTTTGGGAGGCACTTGGTTTTCTTCCATCACCAAAAAAGGGTCAAACAATAGAAGACGTTGGCAATCAACTTTTGCATGATCTAATGTCAAGATCTTTTCTTCaagattttattgattttggtAATAATGGTTGCATCTTTTCATTGCATGATTTGGTGCATGATCTTGCATTATATGTCGCAAAAGAAGAATTTCAATTGGTGAAATTGCATactgaaaatatatttgagaatGTTCTTTATTTGTCATTTCTTAAAAATGATCTTCTTGGCCAAACATCAGTTCCAACTCGATTGAGAACAATATTTTTTCCTATAGGAGCCAAAAACGAAACTTTCTTGTATACTTTGGTGTCAAGGTGTAAATTCTTGCGGATTTTGAAAATAACCGGTTCTACATATGTGAGTTTACCCCATTCCATTGGTAAATTAAAACATTTGAGATGTCTCAATCTTGAGAATAATGAAGAACTGAAGAGTCTTCCTAATTCAGTGTGCAAACTTCAAAATCTCCACGCTTTGAAACTCACTGGATGCACAAATCTTGAAACATTACCTAATGGAATAGGAAACTTGATCAGCCTTCGACAATTACATATAACCACAATGCAATCTAATTTTCCAGACAAAGAGATTGCAAAATTGACTTCCTTAGAAATTATATCATTTGATTCTTGTGATTATTTGGAGTCATTGTTTGAAGGAATACAACTTCCAAATCTTAAACTTTTTAAAGTTAGTTCTTGTGGGAATCTAAAATCTTTGCCATTTCATGCTATTCCAAACGTAGAGAGTTTGTGGATTGATAGTTGCAATAAGATGAAATTGTCATTGGACCATGACAGTGACATCTCCAATTTAAAACTGAAGTTGCTAAGTCTAGTATCTTTGCCTCAACTGGTGAGTTTTCCTCAATGGTTGCAAGGATGTGTAACCACATTACAATCATTGCAACTTTATAATTGTGACAAACTTGATGAGCTTCCTGAGTGGCTGTCAACTCTAATATGTCTAAAAACCATTAACATTGTTGATTGTCCGAAATTGCTTTCACTCCCAGATGACCTGCATCAACTCAAAAACCttgaatatttgaaaattgaagaTTGTGATGCATTATGCAGAAGATATCATCCAAAAATTCCACGACTGCCTAGTCTGCCTCAAATTTCATCAAAGAAAGCGTCTACCATGCTACTCAGTTGTCTCCTGCAGAAGCCTTGGTCTGTTGTTCTTCAGCATACCTTAAGCGAAGGTAATGAAGGTGCTGACTATAGTTAG 2628 0.3604 MAESLLFGLAESFIGKIASRAVEEASLALGVYDELQDIKNTVSLIKAVLLDAEQKQRQNHQLREWLRQIKSVFTDAEDIIDDFECEALRKHVANTSGSIGRKVRRYCSSSNPLVYRLKMAHQIKHIKERFNKVAADRRNFKLQINESDNRVVQRREMTHSHVNESDVIGRELDNKKIIDLLFQDDGGDKSLSVIPIVGIGGLGKTTLAKCVFNEKIVVESFPLKMWVCVSDDFELKNVLIKILNSASVSNSNPIHQENFDVEQLQNHLRNKLVGQKFLLVLDDVWNEDRVKWKELKDIIQGVAGAEGSKVLVTTRSHIVANVMGTTSSHNLQGLSSKDSLSVFVKWAFKEGEVKNYPELMEIGKEIVEKCGGLPLALRTLGSSLFLKVDIEDWKFVRDNEIWNLPQKEGDILPAIKLSYDQLPSYLKSCFACFSFFEKDCGLTNFRVTVFWEALGFLPSPKKGQTIEDVGNQLLHDLMSRSFLQDFIDFGNNGCIFSLHDLVHDLALYVAKEEFQLVKLHTENIFENVLYLSFLKNDLLGQTSVPTRLRTIFFPIGAKNETFLYTLVSRCKFLRILKITGSTYVSLPHSIGKLKHLRCLNLENNEELKSLPNSVCKLQNLHALKLTGCTNLETLPNGIGNLISLRQLHITTMQSNFPDKEIAKLTSLEIISFDSCDYLESLFEGIQLPNLKLFKVSSCGNLKSLPFHAIPNVESLWIDSCNKMKLSLDHDSDISNLKLKLLSLVSLPQLVSFPQWLQGCVTTLQSLQLYNCDKLDELPEWLSTLICLKTINIVDCPKLLSLPDDLHQLKNLEYLKIEDCDALCRRYHPKIPRLPSLPQISSKKASTMLLSCLLQKPWSVVLQHTLSEGNEGADYS 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01885 875 SUPERFAMILY L domain-like 498 840 - -
Tsu01g01885 875 Gene3D - 148 329 IPR027417 -
Tsu01g01885 875 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 7 727 - -
Tsu01g01885 875 PANTHER DISEASE RESISTANCE PROTEIN RP 7 727 IPR044974 GO:0006952
Tsu01g01885 875 Pfam NB-ARC domain 175 398 IPR002182 GO:0043531
Tsu01g01885 875 PRINTS Disease resistance protein signature 615 631 - -
Tsu01g01885 875 PRINTS Disease resistance protein signature 271 285 - -
Tsu01g01885 875 PRINTS Disease resistance protein signature 193 208 - -
Tsu01g01885 875 PRINTS Disease resistance protein signature 370 384 - -
Tsu01g01885 875 CDD RX-CC_like 12 129 IPR038005 -
Tsu01g01885 875 Gene3D Ribonuclease Inhibitor 686 848 IPR032675 -
Tsu01g01885 875 Gene3D Ribonuclease Inhibitor 555 679 IPR032675 -
Tsu01g01885 875 Gene3D - 10 124 - -
Tsu01g01885 875 Gene3D - 413 508 IPR036388 -
Tsu01g01885 875 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 432 IPR027417 -
Tsu01g01885 875 Pfam Rx N-terminal domain 11 97 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01885 Tsu-Chr1 18919556 18924011 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01885 191 818 WRKY Transcription Factor Family AT5G45050 23.574 7.89e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01885 - - mtr:MTR_7g078640 1114.75