Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01882 ATGTGGGTATGTGTCTCTGATGATTTTGAACTTAAGAATGTGCTCCTTAAAATCCTCAACTCTGCTAGTGTTTCTAATTCCAACCCAATTCACCAAGAAAACATTGATGTGGAGCAACTACAAAATCATCTAAGAAACAAACTTGTTGGTCAAAAGTTCTTGCTCGTCTTGGATGACGTATGGAATGAGGATCGTGTCAAATGGGAAGAATTGAAAGATATAATACAAGGATTCGCAGGTGCTGAAGGAAGTAAAGTCTTAGCGACTACACGCAGCCACATTGTAGCTAATGTGATGGGTACCACCTCGTCTCACATTTTGCAAGGGCTGTCCAGTAAGGATTCCTTATCTGTATTTGTCAAATGGGCTTTTAAAGAAGGAGAAGTGGAAAATTATCCCGAGTTAAAGAAGATTGGAGAAGAAATTGTTAAGAAATGTGGAGGGCTTCCTTTGGCCTTAAGAACATTGGGGAGTTCTCTGTTCTTAAAATTTGATATAGAAGATTGGAAGTTTGTTAGGGACAATGAGATTTGGAATTCACCACAAAAAGATGATGATATTTTGCCTGCTATCAAATTAAGTTATGATCAATTGCCTTCTTATTTAAAATCATGTTTTGCTTGTTTCTCCCTCTTTGAAAAGAactttcaattttctaattttaaagttaCTGTGTTATGGGAGGCACTTGGTTTTCTTCCATCACCAAAAAAGGGTCAAACAATAGATGACGTTGGCAATCAACTTTTGCATGATCTACTGTCAAGATCTTTTCTTCAAGATTATATTGACTATGGTAATGCTTGTCAGTTTAAATTGCATGATTTGGTGCATGATCTTGCATTATATGTGGCAAAAGATGAATTTCAATTGGTGAAATTGcacaatgaaaatatatttgagagtGTCCTCTATTTGTCATTTCTTAAAAATGATCTTCTTGGCCAAACACCAGTTCCAACTCCATTGAGAACAATAGTTTTTCCTATAGGAGCCAACAATGAATCTTTCTTGTATAATTTGGTGTCAAGGTGTAAATTCTTGCGGATTTTGAAAATAACTAATTCTACATATATGAGTTTACCCCACTCCATTGGTAAATTAAAACATTTGAGATATCTCAATCTTGAGTATAATAAAGAATTGAAGAGTCTTCGTAATTCAGTGTGCAAACTTCAGAATCTCCACACTTTGAAACTCAAAGGATGCACAAATCTTCAAACATTACCTAATGGAATAGGAAACTTTATCAGCCTACGACAATTACATATAACCACAATGCAATCTAGTTTTCCAGACAAAAAGATTGCGAAATTGACTTCTCTAGAACTAATAACTTTCTACTATTGTGATTATTTGGAGTCATTGTTTGAAGGAATACAACTTCCGAATCTTAAATATTTGTGTGTTTATTCTTGTGGGAATCTAAAATCTTTGCCATTTCATGCTATTCCAAACTTAGAGAGTTTGGTGATTGGTAATTGCAATAAGATGATATTATCATTGAACCATGACAGTGACATCTGCAATTTAAAACTGAAGATGCTAAGTCTAGAATCTTTGCCTCAATTGGTGAGTATTCCTCAATGGTTGCAAGGATGTGTGACCACATTACAATCATTGGAGCTTGTTTATTGTGGCAATCTCGATGAACTTCCTGAGTGGCTTTCAACTCTAACATGTCTAAAGACAATTAGGATTTTTAATTGTCCGAAATTGCTTTCGCTCCCCGATGACCTGCATCAACTCAAAAACCTTGAATATTTGGACATTAAAGGTTGTGATGAATTATGCAGAAGATATGATCCAAAAGTAGGAAAGGATTGGCACAAGATTTCACATATCAAACAAGTCATCATTAAATCACCAGAGATAGAAGATTAA 1884 0.3434 MWVCVSDDFELKNVLLKILNSASVSNSNPIHQENIDVEQLQNHLRNKLVGQKFLLVLDDVWNEDRVKWEELKDIIQGFAGAEGSKVLATTRSHIVANVMGTTSSHILQGLSSKDSLSVFVKWAFKEGEVENYPELKKIGEEIVKKCGGLPLALRTLGSSLFLKFDIEDWKFVRDNEIWNSPQKDDDILPAIKLSYDQLPSYLKSCFACFSLFEKNFQFSNFKVTVLWEALGFLPSPKKGQTIDDVGNQLLHDLLSRSFLQDYIDYGNACQFKLHDLVHDLALYVAKDEFQLVKLHNENIFESVLYLSFLKNDLLGQTPVPTPLRTIVFPIGANNESFLYNLVSRCKFLRILKITNSTYMSLPHSIGKLKHLRYLNLEYNKELKSLRNSVCKLQNLHTLKLKGCTNLQTLPNGIGNFISLRQLHITTMQSSFPDKKIAKLTSLELITFYYCDYLESLFEGIQLPNLKYLCVYSCGNLKSLPFHAIPNLESLVIGNCNKMILSLNHDSDICNLKLKMLSLESLPQLVSIPQWLQGCVTTLQSLELVYCGNLDELPEWLSTLTCLKTIRIFNCPKLLSLPDDLHQLKNLEYLDIKGCDELCRRYDPKVGKDWHKISHIKQVIIKSPEIED 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01882 627 Gene3D Ribonuclease Inhibitor 324 622 IPR032675 -
Tsu01g01882 627 Gene3D - 189 283 IPR036388 -
Tsu01g01882 627 PRINTS Disease resistance protein signature 47 61 - -
Tsu01g01882 627 PRINTS Disease resistance protein signature 146 160 - -
Tsu01g01882 627 PRINTS Disease resistance protein signature 581 597 - -
Tsu01g01882 627 PANTHER DISEASE RESISTANCE PROTEIN RP 1 504 IPR044974 GO:0006952
Tsu01g01882 627 Gene3D - 1 107 IPR027417 -
Tsu01g01882 627 Pfam NB-ARC domain 1 196 IPR002182 GO:0043531
Tsu01g01882 627 SUPERFAMILY L domain-like 272 600 - -
Tsu01g01882 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 208 IPR027417 -
Tsu01g01882 627 PANTHER NBS-LRR DISEASE RESISTANCE PROTEIN 1 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01882 Tsu-Chr1 18889257 18891140 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01882 44 597 WRKY Transcription Factor Family AT5G45050 22.781 1.97e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01882 - - mtr:MTR_7g078640 815.068