Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01876 ATGGAGAAAATGGTACTCACTTCTCAAAACACTTTATTATTCTCATCTACAACACTTCCTAAGAATTCTTCTTCACCACTTTTCTTCTCTAAACAACGTAACAAACTCTTTGGACTTAACTTATCTTCTTCCAAACCTACCCTTCGAATTGCTCCAAGGAACAATAACATTACCCCTATCAAATGTTCGGTTTCTGAAGTCACTGAGCCTATAACTGAGGAGAAGAGGAAATTGATGAGAAGAGCAGATATTAGAAATATTGCAATTGTTGCTCATGTTGATCATGGAAAAACAACTCTTGTTGATGCTATGCTTAAACAAACTAAGGTGTTTCGTGATAATCAAACTGTTCAAGAAAGGATAATGGACTCCAATGATTTGGAGCGTGAAAGAGGAATCACTATACTGAGTAAAAATACATCTGTGACTTATAAAGATGCCAAGATTAATATAATTGATACTCCTGGTCACTCTGATTTTGGTGGTGAAGTTGAGCGTATCTTGAATATGGTCGAAGGAATCCTTCTAGTGGTAGATTCTGTTGAAGGGCCAATGCCGCAGACAAGATTTGTCTTAAAGAAGGCTTTAGAGTTTGGTCAtgcggttgttgttgttgtgaatAAAATAGACAGGTCTTCTGCTCGCCCTGAGTTTGTTGTCAATTCTACTTTCGAACTCTTCATTGAACTAAATGCAACGGATGAACAGTGTGACTTTCAGGTAATATATGCAAGTGGTATAAAAGGGAAAGCAGGGTTGTCTCCTGAAGATCTGGCAGAGGACCTTGGGCCATTGTTTGAATCCATCATGAGATGTATCCCTGGACCACGTATTGATAAAGATGGCTCACTCCAAATGCTTGTTACAAGTACCGAGTTTGAGGGACATAAAGGGCGTATAGCAATTGGGCGCTTGGAAGCTGGAGTTTTAGAAAAAGGGATGGAGGTCAAGGTATGCACTTCAGAAGATTCATGTAGATATGCAAGAGTTAGCGAGCTTTATGTATATGAAAAATTCTTTAGGGTCCCTGCAGATAGGGTGGAGGCTGGTGATATATGTGCAGTATGTGGAATTTCTGATGTTCAGATTGGGGAGACAATTGCGGATAAAGTGACTGGGAAGGCACTACCTTCCATCAAAGTGGAAGAACCAACAGTGAAAATGGCTTTCTCCATAAACACTTCACCTTTTGTCGGTCGTGAGGGAAAGTATGTTACCAGTAGAAATTTAAGGGACAGGCTTTATCGTGAACTTGAGCGAAATCTGGCTATGAAGGTTGAAGATGGTGAAACAGCTGATACATTCATTGTCAGTGGGCGCGGAACTCTGCATATCACTATACTCATTGAAAATATGCGAAGGGAAGGGTTTGAATTCATGGTTGGGCCTCCCAAAGTTATCAACAAGAAGGTGAATGACAAAGTGTTGGAGCCGTACGAGATTGCAACTGTGGAGGTACCAGAAGAGTACGTGGGAGCAGTTGTTGAACTTCTTGGCAAGAGACGAGGACAAATGTCTGATATGCAAGGAGTTGGATCGGAGGGAACTACACTAATCAAATATAAGATCCCAACCCGTGGTCTACTTGGATTGCGGAATGCAATTTTAACTGCTTCCCGAGGGACAGCTATTCTCAACACTGTCTTTGATTGCTATGGTCCTTGGGCCGGTGATATGAGCACTCGTGATTTAGGCTCGCTGGTTGCTTTTGAGGGTGGAACTTGTACTTCTTATGCAGTCGCAAGTTCACAGGAGAGGGGGCAAATGTTTATTGGTCCCGGAGCTGAAGTGTATAAAGGTCAAATTGTTGGCATCCATCAACGCTCTGGGGACTTGGCCTTGAATGTTTGCAAGAAAAAAGCTGCAACAAACATTCGTTCCAACAAGGAACAATCAGTGATTCTTGATACACCATTGGATTACAGTCTGGATGACTGCATTGAATACATCCAAGAAGATGAACTAGTAGAGATCACCCCCCAATGTATAAGAATGTGCAAGAATCCAAAACTTGCAAAGAAAGGAAGGCAGTAA 2034 0.4115 MEKMVLTSQNTLLFSSTTLPKNSSSPLFFSKQRNKLFGLNLSSSKPTLRIAPRNNNITPIKCSVSEVTEPITEEKRKLMRRADIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQTVQERIMDSNDLERERGITILSKNTSVTYKDAKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRSSARPEFVVNSTFELFIELNATDEQCDFQVIYASGIKGKAGLSPEDLAEDLGPLFESIMRCIPGPRIDKDGSLQMLVTSTEFEGHKGRIAIGRLEAGVLEKGMEVKVCTSEDSCRYARVSELYVYEKFFRVPADRVEAGDICAVCGISDVQIGETIADKVTGKALPSIKVEEPTVKMAFSINTSPFVGREGKYVTSRNLRDRLYRELERNLAMKVEDGETADTFIVSGRGTLHITILIENMRREGFEFMVGPPKVINKKVNDKVLEPYEIATVEVPEEYVGAVVELLGKRRGQMSDMQGVGSEGTTLIKYKIPTRGLLGLRNAILTASRGTAILNTVFDCYGPWAGDMSTRDLGSLVAFEGGTCTSYAVASSQERGQMFIGPGAEVYKGQIVGIHQRSGDLALNVCKKKAATNIRSNKEQSVILDTPLDYSLDDCIEYIQEDELVEITPQCIRMCKNPKLAKKGRQ 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01876 677 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 82 277 IPR000795 GO:0003924|GO:0005525
Tsu01g01876 677 SUPERFAMILY Translation proteins 230 372 IPR009000 -
Tsu01g01876 677 SUPERFAMILY EF-G C-terminal domain-like 382 466 IPR035647 -
Tsu01g01876 677 Gene3D Translation factors 278 378 - -
Tsu01g01876 677 PRINTS GTP-binding elongation factor signature 130 138 IPR000795 GO:0003924|GO:0005525
Tsu01g01876 677 PRINTS GTP-binding elongation factor signature 202 211 IPR000795 GO:0003924|GO:0005525
Tsu01g01876 677 PRINTS GTP-binding elongation factor signature 86 99 IPR000795 GO:0003924|GO:0005525
Tsu01g01876 677 PRINTS GTP-binding elongation factor signature 150 160 IPR000795 GO:0003924|GO:0005525
Tsu01g01876 677 Pfam Elongation factor Tu domain 2 298 367 IPR004161 GO:0005525
Tsu01g01876 677 Gene3D - 468 561 - -
Tsu01g01876 677 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 62 677 - -
Tsu01g01876 677 Pfam Elongation factor Tu GTP binding domain 83 274 IPR000795 GO:0003924|GO:0005525
Tsu01g01876 677 SUPERFAMILY EF-G C-terminal domain-like 477 592 IPR035647 -
Tsu01g01876 677 TIGRFAM small_GTP: small GTP-binding protein domain 84 233 IPR005225 GO:0005525
Tsu01g01876 677 CDD BipA_III 384 462 - -
Tsu01g01876 677 PANTHER BNAC09G43450D PROTEIN 62 677 - -
Tsu01g01876 677 CDD TypA_BipA 83 276 - -
Tsu01g01876 677 Gene3D - 81 277 IPR027417 -
Tsu01g01876 677 CDD BipA_TypA_II 284 377 - -
Tsu01g01876 677 Gene3D bipa protein 562 641 IPR042116 -
Tsu01g01876 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 285 IPR027417 -
Tsu01g01876 677 CDD BipA_TypA_C 477 556 IPR035651 -
Tsu01g01876 677 TIGRFAM TypA_BipA: GTP-binding protein TypA/BipA 84 674 IPR006298 GO:0005525
Tsu01g01876 677 Pfam Elongation factor G C-terminus 475 559 IPR000640 -
Tsu01g01876 677 Gene3D Elongation Factor G (Translational Gtpase), domain 3 385 668 - -
Tsu01g01876 677 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 123 138 IPR031157 -
Tsu01g01876 677 SMART EFG_C_a 474 563 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01876 Tsu-Chr1 18831574 18838538 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01876 84 211 Eukaryotic Initiation Factors Gene Family AT3G22980 43.846 5.52e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01876 K06207 - gmx:100785222 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01876 01 18831574 18838538 Tsu01g01876 01 18831574 18838538 ECH