Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01875 ATGGGAAATTGCTGTACAATTCCATCCGTTATTACCAGACGGAATAAACGAAAGGAAAAGCCCGGGAAACATGGGCCTGAGaagaaaaacaacacaaaaaaggAGGAGAAGAATAATTTGGTGGTGTTGAAAGAGCCCACGGGCCGAGAGATAGGGCTAAGATATGAATTAGGGAGGGAATTAGGGAGAGGTGAATTTGGAATAACGTATTTATGTAAAGATAGAGAAACAAATGAAGAACTTGCTTGTAAATCGATTTCGAAGAATAAGCTTAGAACTGCGATTGATATTGAAGATGTTAGAAGAGAAGTTGAAATTATGAGACATTTACCTAAACATCCTAATATTGTTACGTTGAAGGATActtatgaagatgatgatgatgttcatCTTGTTATGGAACTTTGTGAAGGTGGTGAACTTTTTGATCGTATTGTTGCTAAAGGTCATTATACCGAACGCGCCGCTGCTTCCGTCGTTAAAACCATCGTCGAAGTTGTTCAGATGTGCCACAAACATGGTGTGATTCATCGGGATCTCAAACCAGAGAACTTTTTATTTGCAGACAAGAAGGAAACATCGCTTTTGAAGGctattgattttggtttgtcAATTACCTTTAAACCAGGTGATAAATTTAATGAGATAGTTGGAAGTCCATATTACATGGCCCCTGAAGTATTAAAGAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGTGTCATTCTTTACATCTTACTCTGTGGTGTCCCTCCGTTTTGGGCAGAAACTGAGCAGGGAGTTGCTCAAGCAATTATACGATCTAATCTTGACTTTAGTAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAAAAGATGCTTAATCCTGACCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGCAGAATGCTAAGACAGCTCCTAATGTTTCATTGGGAGAAGCAGTCCGATCAAGGCTCATGCAATTTTCTGTTATGAACAAACTTAAGAAAACAGCATTGAGGGTGATAGCAGATCATTTGTCTGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTTGAAGTGATGGATACAGAAAAGAAAGGCAAAATTAACATTGACGAACTACGAGTAGGATTGCATAAGCTAGGCCACCAAATTCCTGATGGAGATGTCCAAATACTTATGGAAGCTGGCGATGTAGACAAAGATGGGTACCTAGATTATGGTGAGTTCGTAGCCATTTCTATTCACCTGAGAAAGATATCCCATGATGAACACCTCCAAAGAGCATTCCAATTTTTCGATAAAAACGAATCTGGGTATATTGAACTTGAGGAGCTACGTAATGCCTTGGCTGATGAGGTTGATGCAAATAGTGAAGAGGTCATTAAAGCAATTATGCATGATGTGGACACTGATAAGGACGGAAGAATAAGTTATGAGGAATTTGCTGCAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAATATTCGCGAGAGAGGTTCACCAGTCTAAGTCTCAAACTGATGAAGGAGGGGTCATTAGAATTGAACAACGGGGCTAGATGA 1596 0.3878 MGNCCTIPSVITRRNKRKEKPGKHGPEKKNNTKKEEKNNLVVLKEPTGREIGLRYELGRELGRGEFGITYLCKDRETNEELACKSISKNKLRTAIDIEDVRREVEIMRHLPKHPNIVTLKDTYEDDDDVHLVMELCEGGELFDRIVAKGHYTERAAASVVKTIVEVVQMCHKHGVIHRDLKPENFLFADKKETSLLKAIDFGLSITFKPGDKFNEIVGSPYYMAPEVLKRNYGPEIDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSNLDFSREPWPKVSDNAKDLVKKMLNPDPKRRLTAQEVLDHPWLQNAKTAPNVSLGEAVRSRLMQFSVMNKLKKTALRVIADHLSVEEVAGIKEGFEVMDTEKKGKINIDELRVGLHKLGHQIPDGDVQILMEAGDVDKDGYLDYGEFVAISIHLRKISHDEHLQRAFQFFDKNESGYIELEELRNALADEVDANSEEVIKAIMHDVDTDKDGRISYEEFAAMMKAGTDWRKASRQYSRERFTSLSLKLMKEGSLELNNGAR 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01875 531 Coils Coil 447 467 - -
Tsu01g01875 531 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 510 - -
Tsu01g01875 531 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Tsu01g01875 531 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Tsu01g01875 531 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Tsu01g01875 531 Pfam EF-hand domain pair 373 419 IPR002048 GO:0005509
Tsu01g01875 531 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Tsu01g01875 531 Pfam EF-hand domain pair 431 494 IPR002048 GO:0005509
Tsu01g01875 531 CDD STKc_CAMK 54 312 - -
Tsu01g01875 531 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01875 531 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
Tsu01g01875 531 ProSiteProfiles EF-hand calcium-binding domain profile. 464 499 IPR002048 GO:0005509
Tsu01g01875 531 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Tsu01g01875 531 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Tsu01g01875 531 MobiDBLite consensus disorder prediction 13 38 - -
Tsu01g01875 531 ProSitePatterns EF-hand calcium-binding domain. 477 489 IPR018247 -
Tsu01g01875 531 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 8 14 510 - -
Tsu01g01875 531 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Tsu01g01875 531 MobiDBLite consensus disorder prediction 24 38 - -
Tsu01g01875 531 SUPERFAMILY EF-hand 337 506 IPR011992 -
Tsu01g01875 531 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01875 531 Gene3D - 322 496 - -
Tsu01g01875 531 SUPERFAMILY Protein kinase-like (PK-like) 54 320 IPR011009 -
Tsu01g01875 531 CDD EFh 432 494 IPR002048 GO:0005509
Tsu01g01875 531 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01875 531 SMART efh_1 432 460 IPR002048 GO:0005509
Tsu01g01875 531 SMART efh_1 396 424 IPR002048 GO:0005509
Tsu01g01875 531 SMART efh_1 468 496 IPR002048 GO:0005509
Tsu01g01875 531 SMART efh_1 360 388 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01875 Tsu-Chr1 18816234 18821081 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01875 1 526 EF-hand Containing Proteins AT5G19450 75.425 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu01g01875 Pkinase 4.7e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01875 K13412 - gmx:100815320 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01875 01 18816234 18821081 Tsu01g01875 01 18816234 18821081 ECH
Tsu07g03371 07 40131326 40136334 Tsu01g01875 01 18816234 18821081 PCT