Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01873 ATGTGCGACGGAATTGGTACCGTTCTCAAAATCCatcaacaaattttattgaaGATTCTGACCGATATCTCGCCGTTCTCGAAATCAATAGATCGGAAGGGGTGTGCAAAAGAAACTGAGATGCATAGCGTGGAAGAAATAGCTATGAAGGAGCTTATGAAGTCCCCAGACTGTTGTCGAACTGCGATGGCGTTGTTACGGCAAGCTCCGCCGCCTAAGCCGCCGGATAAAGGCAAAGTTGGGATTTCAGCTACAATACCGGTACTAAGTTTCTACTATGATAAACACATGAGCCAAAATCAAGCAGATGAGACTCTTTATCAAGATGagaactcggggtcgagttctttTGAGGTGGATGAGTCTGATGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTTAAAAAGATGCTTGATCCTGACCCAAAGCGCCGATTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGATCAAACTTGTGTTGACAGTACCCCATACGCAATATGACATTCTTAAGAATATGCTTAATACACATGATGTGTTGGGTCATCCATGGTTGCAGAATGCAAAGACAGCTTCTAATGTTTCATTGGGAGAAACAGTCAGAGCAAAGCTCATGCAGTTTTCTATAATGAACCAACTTACGAAAACAACATCTAGGGTGATTCTAAAGCATTTGTCTGCAATAGAAAATGTTATAGAATCAGAAATATACTGGGTGAGGGATACAGGAGTTAAATTCAGCAAGATTGACGCCGATGAAGTACGAGTAAGGTTGTCTAAGCTAGGCCAACAAATTCATGATGTAGATGCGCGAAGACTTATGGACGCTTGCAACGAAAATGGTTACCTTGATTATGGAGAGTTTTTAGCCATTTCTGATCATCTGAGAAAGATGTCTCATGAAGAACACGTCAATGGagcatttcaattttttgataaaaagcaATCTGGGTATATTGAACTTGAGGAGTTACGTAAGGCCTTAGCTGATGACATTGACACACGGAGTAAAAAACTCATTAAGGCAATTATGCATGATGTGGCCAAACATAAGAGTGCTATGCACATTGCTGCCAATTATGTCTTTCACCAGAGATTGAAGCACTTAGACATTGATTGTCACATTGTTAGTCTCAAAGTGCATGAAGGTCTTGTGAAGCTCTTGCCTGACCCATCTGCTTCCAAGACTTCCAATCCTCGTCTATTTCATTCTTTAGTCACCAAGCTTGGATTAGTGACTATTTTCAACCCTCTAGCTTGTGGGGGGTAA 1284 0.3972 MCDGIGTVLKIHQQILLKILTDISPFSKSIDRKGCAKETEMHSVEEIAMKELMKSPDCCRTAMALLRQAPPPKPPDKGKVGISATIPVLSFYYDKHMSQNQADETLYQDENSGSSSFEVDESDEPWPKVSDNAKDLVKKMLDPDPKRRFTAQEVLDHPWLIKLVLTVPHTQYDILKNMLNTHDVLGHPWLQNAKTASNVSLGETVRAKLMQFSIMNQLTKTTSRVILKHLSAIENVIESEIYWVRDTGVKFSKIDADEVRVRLSKLGQQIHDVDARRLMDACNENGYLDYGEFLAISDHLRKMSHEEHVNGAFQFFDKKQSGYIELEELRKALADDIDTRSKKLIKAIMHDVAKHKSAMHIAANYVFHQRLKHLDIDCHIVSLKVHEGLVKLLPDPSASKTSNPRLFHSLVTKLGLVTIFNPLACGG 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01873 427 Pfam Protein kinase domain 96 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01873 427 Gene3D - 207 356 - -
Tsu01g01873 427 SUPERFAMILY EF-hand 253 353 IPR011992 -
Tsu01g01873 427 ProSiteProfiles EF-hand calcium-binding domain profile. 304 339 IPR002048 GO:0005509
Tsu01g01873 427 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 119 161 - -
Tsu01g01873 427 Gene3D Transferase(Phosphotransferase) domain 1 15 167 - -
Tsu01g01873 427 Gene3D - 231 298 - -
Tsu01g01873 427 PANTHER SERINE/THREONINE-PROTEIN KINASE 119 161 - -
Tsu01g01873 427 PANTHER SERINE/THREONINE-PROTEIN KINASE 177 357 - -
Tsu01g01873 427 MobiDBLite consensus disorder prediction 106 130 - -
Tsu01g01873 427 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 177 357 - -
Tsu01g01873 427 SUPERFAMILY Protein kinase-like (PK-like) 120 177 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01873 Tsu-Chr1 18798561 18805625 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01873 119 358 EF-hand Containing Proteins AT2G41860 49.174 3.96e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu01g01873 Pkinase 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01873 K13412 - tcc:18598981 235.343