LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01871	ATGTTCTTTCAACCAGGTGAAAGATTGAATCAGATAGTTGGAAACCTATATTACATGGCCCCTGAAGTATTAAATCGAAGTTATGGCCCTGAAATTGATATCTGGAGTGTTGGAGTCACTCTTTGCATCTTACTTTGTGGTTTCCCTCCATTTTGGGCAGAAACTGAGCAGGGAGTTGCTAAAGCAATTACACAATCTGTTATTGACTTTAATAAGAAGCCATGGCCAAAGGTTTCTcatagtgcaaaagaccttgtcaAAAAGATGCTTGATCCTGACCCAAAGCTCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGATCCATAACCTTGTTAAGAAGGAACCCGATACGGAAAAAGACCTTGTTAAGAAGATGCTTACTGCACATGAAGTGTTGGATCATCATCCATGGTTGCAGAATGCAAAGACAGCTCCTAATGTTTCATTGGGAGAAAATGTCAGAGAAAAGCTCTTGATATTTTCTGCTATGAACCGACTTACGAAAACAACATCAAGTGTGATTGCACAACATTTGAATGATGAAGAATTATGGGTGAGGGATACAGGAGTTAAAGGCCAAAATAACCACGATGAAGTACGACTAAGATTGTATAGGCTAGGCCAACAATATCTTGATGTAGATGTGCAAAGACTTGTTGACGCTTTTGATGGAGCCAAAGAAGGTTACCTAAATTATGGAGAGTTTTTAGCCATTTCTAATCATCTGAGAAAGAGATCCCATGAAGAGCACGTCGATAATGCATTTCAATTTTTCGATAAAAAACAATCTGGGTATATTGAACTTGAGGAGTTAAGTAAGGCCTTAGTTGATGGTATTCACACACACAGTAAAGAAGTCGTTAAGGCAATTATGCATGATGTGGACACAAATATGGATGGAAAAATTAGTTACGAGGAAATTACAAATCGGAGTTTTAAACTGATGAAGGAGTGGTCATCAGAATTGAAAGGCAAATATGATAAAGATCATGTTGTCGGCaaattttcttttccttcattATAA	1032	0.3682	MFFQPGERLNQIVGNLYYMAPEVLNRSYGPEIDIWSVGVTLCILLCGFPPFWAETEQGVAKAITQSVIDFNKKPWPKVSHSAKDLVKKMLDPDPKLRLTAQEVLDHPWLIHNLVKKEPDTEKDLVKKMLTAHEVLDHHPWLQNAKTAPNVSLGENVREKLLIFSAMNRLTKTTSSVIAQHLNDEELWVRDTGVKGQNNHDEVRLRLYRLGQQYLDVDVQRLVDAFDGAKEGYLNYGEFLAISNHLRKRSHEEHVDNAFQFFDKKQSGYIELEELSKALVDGIHTHSKEVVKAIMHDVDTNMDGKISYEEITNRSFKLMKEWSSELKGKYDKDHVVGKFSFPSL	343

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01871	343	PANTHER	SERINE/THREONINE-PROTEIN KINASE	2	118	-	-
	Tsu01g01871	343	PANTHER	SERINE/THREONINE-PROTEIN KINASE	119	328	-	-
	Tsu01g01871	343	CDD	EFh	257	309	IPR002048	GO:0005509
	Tsu01g01871	343	Pfam	Protein kinase domain	5	109	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01871	343	ProSiteProfiles	EF-hand calcium-binding domain profile.	285	320	IPR002048	GO:0005509
	Tsu01g01871	343	ProSiteProfiles	EF-hand calcium-binding domain profile.	249	284	IPR002048	GO:0005509
	Tsu01g01871	343	SMART	serkin_6	2	109	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01871	343	PANTHER	CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE	119	328	-	-
	Tsu01g01871	343	PANTHER	CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE	2	118	-	-
	Tsu01g01871	343	SUPERFAMILY	Protein kinase-like (PK-like)	3	132	IPR011009	-
	Tsu01g01871	343	ProSitePatterns	EF-hand calcium-binding domain.	298	310	IPR018247	-
	Tsu01g01871	343	SMART	efh_1	217	245	IPR002048	GO:0005509
	Tsu01g01871	343	SMART	efh_1	253	281	IPR002048	GO:0005509
	Tsu01g01871	343	SMART	efh_1	289	317	IPR002048	GO:0005509
	Tsu01g01871	343	Pfam	EF-hand domain pair	255	310	IPR002048	GO:0005509
	Tsu01g01871	343	SUPERFAMILY	EF-hand	181	312	IPR011992	-
	Tsu01g01871	343	Gene3D	Transferase(Phosphotransferase) domain 1	1	126	-	-
	Tsu01g01871	343	ProSiteProfiles	Protein kinase domain profile.	1	109	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu01g01871	343	Gene3D	-	127	313	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01871	Tsu-Chr1	18791355	18793856	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01871	1	328	EF-hand Containing Proteins	AT5G19450	49.162	1.30e-110	330

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Tsu01g01871		Pkinase	3.5e-25	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01871	K13412		-	han:110867206	346.28