Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01868 ATGCCTCTTGTGGAGAGATTCTTTGTTGGGAGGATGTGCCACAATCATGGTGTGATGCATCGGAATCTCAAACTCGAAAACTTTTTGTTTGCAGACAAGACGGAAACAGGACCTTTGAAAGTTGCTGACTTTCATCTGTCAATTTTCTTTCAACCAGGTGAAAGATTGAATCAGCTGGTTGGAAGTTCATATTACATGGCCCCTGAAGTATTAAAGAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGAGTCATTCTTTACTTCTTACTTTGTGGTTTCCCTCCGTTTTGGGCAGAAACTGAGAAGGGAGTTTCTCAAGCAATTATCGGTTATGTTGTTGACTTTGAAAGCGATCCATGGCCACATGTTTCTGTTAATGCAAAAGACCTTGTTAAAAAGATGCTTGATCCTGACCCAAAGCACCGACTTACTGCACAGGAAGTGTTAGATCATCCATGGTTTACCAAGCATTTTAAGGAGAAAATCGATAATGCAAAATACGTTGTTAAGAATATGCTTGCTGCACATGATGCGTCGGGTCATCCATGGTTGCGGAATCCAAATACGGCTCCTAATGTTTCATTGGGAGAAACAGTCAGAAGAAAGCTCTTACAATTTTCTATAATGAACCGGCTTACGAAAACAACATCGAGGGTGATTGCAAATCATTTGCATGATGAAGGATCCTGGGTTATACATACAGGAATTAAAGGCCTCGTAGTCCACGATGAAGTACGACGAAGGTTGCATAGGCTAGGCCAACAAAATCCTGATGTAGATGTGCAGAGGCTTGTTGACATTTTTGATGGAGACACAGATGGTGGTTACCTAGATTATGGAAGGTTTTTAGACATTTCTGTTCATCTAAGAAAGAGATCCCATGAAGAGCACGTCGATGaagcatttaaattttttgataaagaacAATCTGGGTATATTGAACTTGAGGAGTTATGTAAGGCCTTAGCTGCTGAAACTTACACAAGGAGTCAAAAAGTCATTTATGCAATTATGCATGATGTGGCCACAAATAAGGATGGAAGAATTAGTTATGAGGAAATTACCAATCGGAGTTTCACCGAGGTTACAAGAATTGTGAATAATAAGCCTACATATTTAGAAAAATACAGATATGGATCTaatgttttctctcttttttcttaa 1170 0.3829 MPLVERFFVGRMCHNHGVMHRNLKLENFLFADKTETGPLKVADFHLSIFFQPGERLNQLVGSSYYMAPEVLKRNYGPEIDIWSAGVILYFLLCGFPPFWAETEKGVSQAIIGYVVDFESDPWPHVSVNAKDLVKKMLDPDPKHRLTAQEVLDHPWFTKHFKEKIDNAKYVVKNMLAAHDASGHPWLRNPNTAPNVSLGETVRRKLLQFSIMNRLTKTTSRVIANHLHDEGSWVIHTGIKGLVVHDEVRRRLHRLGQQNPDVDVQRLVDIFDGDTDGGYLDYGRFLDISVHLRKRSHEEHVDEAFKFFDKEQSGYIELEELCKALAAETYTRSQKVIYAIMHDVATNKDGRISYEEITNRSFTEVTRIVNNKPTYLEKYRYGSNVFSLFS 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01868 389 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 9 158 - -
Tsu01g01868 389 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 172 358 - -
Tsu01g01868 389 ProSiteProfiles EF-hand calcium-binding domain profile. 295 330 IPR002048 GO:0005509
Tsu01g01868 389 CDD EFh 299 355 IPR002048 GO:0005509
Tsu01g01868 389 Gene3D Transferase(Phosphotransferase) domain 1 11 194 - -
Tsu01g01868 389 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 158 - -
Tsu01g01868 389 PANTHER SERINE/THREONINE-PROTEIN KINASE 172 358 - -
Tsu01g01868 389 SUPERFAMILY Protein kinase-like (PK-like) 12 194 IPR011009 -
Tsu01g01868 389 SUPERFAMILY EF-hand 242 358 IPR011992 -
Tsu01g01868 389 SMART serkin_6 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01868 389 Pfam EF-hand domain pair 299 356 IPR002048 GO:0005509
Tsu01g01868 389 Pfam Protein kinase domain 12 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01868 389 Gene3D - 195 360 - -
Tsu01g01868 389 ProSiteProfiles Protein kinase domain profile. 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01868 389 SMART efh_1 299 327 IPR002048 GO:0005509
Tsu01g01868 389 SMART efh_1 335 363 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01868 Tsu-Chr1 18757903 18760429 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01868 9 355 EF-hand Containing Proteins AT5G19450 54.366 2.93e-129 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu01g01868 Pkinase 1.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01868 K13412 - gmx:100815320 403.675