Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01865 ATGCATAGGCTTCCAATAACTAGCCTCTACTTGGTCGGCAATAATATGGGAGAGGCGCtccattcaaaatttcaaatgaccCTGCCGAATGCCTCTTGTGGGAGAGATTCTTTGTTGATGTGCCACAAACATGGTGTGATGCATCGGAATCTCAAACTCGAAAACTTTTTGTTTGCAGACAAGACGGAAACAGGACCTTTGAAAGTTGCTGACTTTCATCTGTCAATTTTCTTTCAACCAGGTGAAAGATTGAATCAGCTGGTTGGAAATTCATATTACATGGCCCCTGAAGTATTAAAGAGAAATTATGGCCCTGAAATTGATATCTGGAGTGCTGGAGTCATTCTTTACTTCTTACTTTGTGGTTTCCCTCCGTTTTGGGCAGAAACTGAGAAGGGAACTTCTCAAGCAATTATCGATTATGTTGTTGACTTTAAAAGGGATCCATGGCCACATGTTTCTGTTAATGCAAAAGACCTTGTTAAAAAGATGCTTGATCCTGACCCAAAGCGCCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTGACCAAGCATGTTAAGGAGAAATTCAATAATGCAAAAGACATTGTTATGAATATGCTTACTGCACATGATGTGTTGGGTCATCCATGGTTGCAGAATCCAAATACGGCTCCTAATGTTTCATTGGGAGAAACAGTCAGAAGAAAGCTCTTACAATTTTCTGTAATGAACCAGCTTACGAAAACAACATCGAGAGTGATTGCAGAGCATTTGTATGATGAAGAATTCTGGGTTATGGATCCAACAATTAACGGCTACGTTAACCACGATGAAGTACGACGAAGGTTGTATATGCTAGGCCAACAAAATCCTGATGTAGATGTGCAAAGACTTGTTGACACTTTTGATGGAGACAGAGATGGTGATTACCTAGATTATGGAAGGTTTTTAGACATATCTGTTCCTCTGAGAAAGAGTTCCCATGAAGAGCACGTCGATAatgcatttaaattttttgataaaaaacaaTCTGGGTATATTGAACTCGACGAGTTATTTAAGGCCTTAGCTGAAACTAAGAGTGACACAATGAGTGAAAAAGTCATTTATGCAATTATGCAAGATGTGGCCACAAATAAGGATGGAAGAATTAGTTATGAGGAAATTACCAATCGAAGTTTCAAACTGATGCAAGTGGTTACAAGAATTGATCAAAAAGGATACTCCTTTTCCGTCATTATTGTATAG 1236 0.3811 MHRLPITSLYLVGNNMGEALHSKFQMTLPNASCGRDSLLMCHKHGVMHRNLKLENFLFADKTETGPLKVADFHLSIFFQPGERLNQLVGNSYYMAPEVLKRNYGPEIDIWSAGVILYFLLCGFPPFWAETEKGTSQAIIDYVVDFKRDPWPHVSVNAKDLVKKMLDPDPKRRLTAQEVLDHPWLTKHVKEKFNNAKDIVMNMLTAHDVLGHPWLQNPNTAPNVSLGETVRRKLLQFSVMNQLTKTTSRVIAEHLYDEEFWVMDPTINGYVNHDEVRRRLYMLGQQNPDVDVQRLVDTFDGDRDGDYLDYGRFLDISVPLRKSSHEEHVDNAFKFFDKKQSGYIELDELFKALAETKSDTMSEKVIYAIMQDVATNKDGRISYEEITNRSFKLMQVVTRIDQKGYSFSVIIV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01865 411 Gene3D Transferase(Phosphotransferase) domain 1 36 201 - -
Tsu01g01865 411 PANTHER SERINE/THREONINE-PROTEIN KINASE 193 386 - -
Tsu01g01865 411 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 188 - -
Tsu01g01865 411 CDD EFh 331 384 IPR002048 GO:0005509
Tsu01g01865 411 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 8 193 386 - -
Tsu01g01865 411 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 8 39 188 - -
Tsu01g01865 411 SUPERFAMILY Protein kinase-like (PK-like) 38 221 IPR011009 -
Tsu01g01865 411 Pfam Protein kinase domain 38 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01865 411 ProSiteProfiles EF-hand calcium-binding domain profile. 323 358 IPR002048 GO:0005509
Tsu01g01865 411 ProSiteProfiles Protein kinase domain profile. 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01865 411 SMART serkin_6 1 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01865 411 SUPERFAMILY EF-hand 238 387 IPR011992 -
Tsu01g01865 411 Pfam EF-hand domain pair 329 385 IPR002048 GO:0005509
Tsu01g01865 411 Gene3D - 202 388 - -
Tsu01g01865 411 SMART efh_1 364 392 IPR002048 GO:0005509
Tsu01g01865 411 SMART efh_1 327 355 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01865 Tsu-Chr1 18719560 18723324 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01865 40 384 EF-hand Containing Proteins AT5G12480 56.250 2.15e-134 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu01g01865 Pkinase 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01865 K13412 - mnt:21388448 402.134