Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01861 ATGGGAACTCCAGAATTTCCAGATCTCGGAAAACACTGTGCTTTCTCCGATTGCAAACTCATTGATTTCTTGCCCTTCACTTGCGATCGCTGCAACCAAGTGTATTGTTTGGAACACCGAAGTTATATCAAACATCAGTGTACAAAAGCTGACAAGCAAGATGTCACTGTGGTAATATGCCCACTTTGCGCCAAAGGAGTTCGCCTAGTTCCTGAGCAAGATCCAAACATAACATGGGAGAATCATGTTAACACCGACTGCGACCCATCAAATTATGAAAAAGctacaaagaagaaaaaatgccCTGCAGCTGGATGCAGAGAGATCTTAGTATTCTCAAACACAATTAAGTGCAGGGATTGCATGGTAGACCATTGTTTGAAGCATAGGTTTGGACCTGATCACAAATGTCCAGGACCTAAAAAATTGGAATCAAATTTCTCTTTTATGACTCTAATGAATAGGAATAGAAAACAAGAGTCTAAGAAAACCAATTCAAGTTCAGCCTCCTCCTCATCTAAGTGGACAACGAGCTTTCTTAATGCCGCTTCTAGTATTCGAGCTTCAGCTGAGGCTGGAATGTCGAAGTTGAGTGGTGAAATTAACCAAGCATGGGGAACATCAAGTGATGGTGGGGGCAAGAGCAATAGCAGTGGTCAAGTGGAGCAATGCCCGCAATGTGATGCTAAGTTTTCCTCGGTCACTACTTTGGTGGATCATGTACAGAAAGTTCATGAAAGAAGCGGTAATCGCTCTGCTGCAAAAGTTACAATTGATGCATGTCCTAAGTGTAGTAAAGGATTCAGAGACCCTGTGTCCCTTGTGGAGCATGTTGAGAGAGATCATGGCGGCAGTTCGACATCATAG 867 0.4221 MGTPEFPDLGKHCAFSDCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCTKADKQDVTVVICPLCAKGVRLVPEQDPNITWENHVNTDCDPSNYEKATKKKKCPAAGCREILVFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKLESNFSFMTLMNRNRKQESKKTNSSSASSSSKWTTSFLNAASSIRASAEAGMSKLSGEINQAWGTSSDGGGKSNSSGQVEQCPQCDAKFSSVTTLVDHVQKVHERSGNRSAAKVTIDACPKCSKGFRDPVSLVEHVERDHGGSSTS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01861 288 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Tsu01g01861 288 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Tsu01g01861 288 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Tsu01g01861 288 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 287 - -
Tsu01g01861 288 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Tsu01g01861 288 Gene3D Classic Zinc Finger 197 285 - -
Tsu01g01861 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 250 IPR013087 -
Tsu01g01861 288 ProSitePatterns Zinc finger C2H2 type domain signature. 261 282 IPR013087 -
Tsu01g01861 288 Gene3D - 2 60 IPR035896 -
Tsu01g01861 288 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Tsu01g01861 288 Gene3D - 80 168 IPR035896 -
Tsu01g01861 288 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Tsu01g01861 288 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Tsu01g01861 288 Pfam C2H2-type zinc finger 223 245 - -
Tsu01g01861 288 ProSiteProfiles Zinc finger C2H2 type domain profile. 259 287 IPR013087 -
Tsu01g01861 288 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Tsu01g01861 288 MobiDBLite consensus disorder prediction 202 222 - -
Tsu01g01861 288 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 287 - -
Tsu01g01861 288 SUPERFAMILY beta-beta-alpha zinc fingers 223 278 IPR036236 -
Tsu01g01861 288 ProSitePatterns Zinc finger C2H2 type domain signature. 224 245 IPR013087 -
Tsu01g01861 288 SMART c2h2final6 222 245 IPR013087 -
Tsu01g01861 288 SMART c2h2final6 259 282 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01861 Tsu-Chr1 18652867 18655303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01861 1 288 C2H2 Transcription Factor Family AT2G41835 62.153 2.86e-128 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01861 zf-AN1 1.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01861 - - gmx:100786272 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01861 01 18652867 18655303 Tsu01g01861 01 18652867 18655303 ECH
Tsu07g03365 07 40078858 40080617 Tsu01g01861 01 18652867 18655303 PCT