Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01853 ATGGAAGACCGCTGCAATTCACTTATTCCATTGGATATTGAAACAAATAGGTGTGAAGAAGTGTTGAGACATTGTCGACCAAAGGAGTGTAAACCTGTGAACCATAATTTAGATTATTGTGATGTGGTTCCTATACCACAGGATTGGATGAAATTTAATTCGGAGGATGAGGTAAGATCATATTATACAAAATATGCAAACCAAGAAGGTTTTACCATTATGAAAAAAACCTCAAAAAAGGGAGCTGATGGTAAGGTGTTCTATTTTATACTTGCATGTTCAAGACAAGGAAATAGAAGAATCGGTAAAACGAATCCTGTCACAAATTGTCCCTCAGAGGAACAGAAGTGTGAAGCCAGGATCATTGTTTATTTATGTGAAGATGGTGCCTACCGTTTTAAATCTATTACGCTTAATCACAATCATGAATTGAATCCAAATCAAGTCAAGTCTAGAAATAGTGCTGATACTAACAAGAGGTTGAAAAGGACATTAGATCCAAATGATCAAGCTGAGAAAGGAGTGAAGAAGAGTTTTGGGTCTCTTGTGGTTAAACCTGAGGTCTATGAAAATCTGGCATTTTGTGAACAAGGTTTTAGAAATTACATTCATAAAGAGAAACGACTTATTGGGGAAGATGGAGACGGTCATGCCCTTCATAAGTATTTTATGCGGATGCAAGAACAAGACAGCAATTTCTTTTATGCAATTGACTTTGATGATTCCTTTTGTGTGAAGAACGTTTTTTGGGCCGATGGAAGGAGCAGAGCTACATACAAATTATTTGGTGATGTGGTGAAATTTGATTCTACATATCTCTCTAACCAATACAAAATACCTCTTACATTCTTTGTTGGAGTTAACCATCATGGACAATCTATACTTTTCGGTTGTGGGTTATTGTCCTCTGAAGACACACAGTCATTTGTGTGGTTGTTTCAATCATGGCTGGTTTGCATGTCTGGTGTTCAACCGAAAGGTATCATAACATATCAACACGAGGCTGTGCAGAGTGCAATTGGTATTGTATTCCCCTCCACTCGACATTCTTGGTGTTTATCACATATTATGAAAAAGCTTCCTCAAAATATAGGTGGACACGCCGAATATGATTCTTTAAGTTACCATTTGCAGAGAGTTGTATATGATTCATTCACTACAAATGAATTTGAAACAGCTTGGAAGATGATTGTAGAGGAATTTGGCCTACAGGACAATGAATGGTTGAGGGAGTTGTACCTTGAAAGACACAGATGGGTTCCTACATTTATAAGATGTAGTTTTTGGGCTGGAATGTCTGCTACCCAACTTGGTGAAATTGAGCGTGGTTTTTTTGATGAAATAATCAGTGGCCAAACAAGTTTGAAACAGTTTGTTGGTAAATATGATATTTCTTTGCAAGCTAAAGTAGAAAAAGAGTTTGAAGCTGACTTTCGGTCATATAGTAGCACTCTTGAATGTGCTACAAAGTCTCCAATTGAACGGCAATTCCAATCTGCATACACTCATGCAAAGTTTCTAGAGGTTCAGAAAGAATTTATAGGGAAAGCTGATTGTAACGTTTGTATTGCAGGTGTTGAAGGTTCTATTTGTCACTATAATGTCATTGAAGATACAATGATGGGTGATAAACCCAAGGAAACCATGTTTCAAGTCACATTTGACAGGGTTAACTGTGATGTAAAGTGCATATGCAACATGTTTGAATTTAAAGGTATACTTTGTAGACACTCACTTGCTATACTATCTATGGAACGAGTAAAAGAGATCCCTTGTAAATACATCTTGAATAGATGGATGAAAAGTATGAAGAGAAGGCATGCATATGTAAAGACCAGCTATGCTGCAAAGCAGCTTCAACCTCAGATTCAAAACTTTGATTTATTATGCAAACAATTTGAAAGTGTTGCTGAGGTTGCTTCCGAATTCGAGGAAACAAGTTCTTTTGTAAAGAATACTATTTGTGACTTGAAAGAGAAGTTGGAATCGTGGGCATCTCGTTTGAGAAACTCATCTGATATGGCAGTGCCTATAAGTTGTGCAGTTGAAATcataatatatgtatttaaGCCCCAAAGAGTACTCTTGAAATCATAG 2097 0.3662 MEDRCNSLIPLDIETNRCEEVLRHCRPKECKPVNHNLDYCDVVPIPQDWMKFNSEDEVRSYYTKYANQEGFTIMKKTSKKGADGKVFYFILACSRQGNRRIGKTNPVTNCPSEEQKCEARIIVYLCEDGAYRFKSITLNHNHELNPNQVKSRNSADTNKRLKRTLDPNDQAEKGVKKSFGSLVVKPEVYENLAFCEQGFRNYIHKEKRLIGEDGDGHALHKYFMRMQEQDSNFFYAIDFDDSFCVKNVFWADGRSRATYKLFGDVVKFDSTYLSNQYKIPLTFFVGVNHHGQSILFGCGLLSSEDTQSFVWLFQSWLVCMSGVQPKGIITYQHEAVQSAIGIVFPSTRHSWCLSHIMKKLPQNIGGHAEYDSLSYHLQRVVYDSFTTNEFETAWKMIVEEFGLQDNEWLRELYLERHRWVPTFIRCSFWAGMSATQLGEIERGFFDEIISGQTSLKQFVGKYDISLQAKVEKEFEADFRSYSSTLECATKSPIERQFQSAYTHAKFLEVQKEFIGKADCNVCIAGVEGSICHYNVIEDTMMGDKPKETMFQVTFDRVNCDVKCICNMFEFKGILCRHSLAILSMERVKEIPCKYILNRWMKSMKRRHAYVKTSYAAKQLQPQIQNFDLLCKQFESVAEVASEFEETSSFVKNTICDLKEKLESWASRLRNSSDMAVPISCAVEIIIYVFKPQRVLLKS 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01853 698 Pfam SWIM zinc finger 559 583 IPR007527 GO:0008270
Tsu01g01853 698 Pfam FAR1 DNA-binding domain 60 146 IPR004330 -
Tsu01g01853 698 PANTHER OS03G0843700 PROTEIN 45 673 - -
Tsu01g01853 698 Pfam MULE transposase domain 265 359 IPR018289 -
Tsu01g01853 698 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 45 673 IPR031052 GO:0006355
Tsu01g01853 698 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Tsu01g01853 698 MobiDBLite consensus disorder prediction 144 167 - -
Tsu01g01853 698 SMART 26again6 561 588 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01853 Tsu-Chr1 18579740 18583040 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu01g01853 MULE 9.9e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01853 - K17604 gmx:102663358 749.584