LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01839	atggggAGCAGAAATATTGAGACtcagaatttgattaaaagacaAGTTGCCATCTCCGAGCGACGAAAGAGTTTGTTCAAGAAAGCCAAAGAATTGTCTATTCTTGGTGATGCGGAGGTCGGTGTCATCGTATTTTCTAGCACTGGCAAGCTCTATGAGTTCTCAAGGCCAAGCATGGAGCACATCCTTTCAAGGTACGGTGCCGAGCAACAGCAGCCTAATAATGCTCAGCCTCCACCACAAGTTGTGGAGCTTGATACTGCCATTCTGGAGGAAGAAATGGCAAAACTGCGCTCAGCTTACGTAAGGATGACAGGTAAGGAGCTTGATGGATTGCAGATTAAAGAACTGCAGGACCTAGAAAATCAAATTAGTGAAGCGATATTAGCTGTCAAAACCAAGAAGGAACAACTGCTTTCTGAACAACTTGAGAAATCCAAGTTACAGGAGCAAATCGCTAGGGCAGAGATTGAAGATCTGCGTAAACAACTTAAGGAGATAAAGAATCAAAGAAAGCCAGAGTTAGGgtCGTCATCATCAGATCATGGTAGCAGGTACAGATCATTGAGGATGAGAGCTTCCAACAGCTAG	591	0.423	MGSRNIETQNLIKRQVAISERRKSLFKKAKELSILGDAEVGVIVFSSTGKLYEFSRPSMEHILSRYGAEQQQPNNAQPPPQVVELDTAILEEEMAKLRSAYVRMTGKELDGLQIKELQDLENQISEAILAVKTKKEQLLSEQLEKSKLQEQIARAEIEDLRKQLKEIKNQRKPELGSSSSDHGSRYRSLRMRASNS	196

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g01839	196	SMART	madsneu2	1	57	IPR002100	GO:0003677\|GO:0046983
	Tsu01g01839	196	Gene3D	-	10	79	IPR036879	GO:0003677\|GO:0046983
	Tsu01g01839	196	ProSiteProfiles	MADS-box domain profile.	9	58	IPR002100	GO:0003677\|GO:0046983
	Tsu01g01839	196	Coils	Coil	117	170	-	-
	Tsu01g01839	196	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	12	54	IPR002100	GO:0003677\|GO:0046983
	Tsu01g01839	196	ProSiteProfiles	K-box domain profile.	80	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Tsu01g01839	196	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	9	149	-	-
	Tsu01g01839	196	MobiDBLite	consensus disorder prediction	164	196	-	-
	Tsu01g01839	196	PRINTS	MADS domain signature	20	35	IPR002100	GO:0003677\|GO:0046983
	Tsu01g01839	196	PRINTS	MADS domain signature	35	56	IPR002100	GO:0003677\|GO:0046983
	Tsu01g01839	196	MobiDBLite	consensus disorder prediction	173	196	-	-
	Tsu01g01839	196	SUPERFAMILY	SRF-like	9	69	IPR036879	GO:0003677\|GO:0046983
	Tsu01g01839	196	PANTHER	-	9	149	-	-
	Tsu01g01839	196	Pfam	K-box region	86	164	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01839	Tsu-Chr1	18469529	18471625	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01839	1	169	MADS-box Gene Family	AT5G13790	44.186	3.48e-39	133

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Tsu01g01839		K-box	1.4e-12	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01839	-		-	gmx:100792278	188.734