Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01838 ATGGGAAGAGGAAAAATTGAGATTAAGAAGATTGAGAATTTGAATAGCCGGCAAGTTACTTTTTCTAAGAGACGAAATGGTTTGCTTAAGAAAGCCAAAGAGTTGTCTGTTCTTTGTGATGCTGAGGTTGCTGTTATTATATATTCTGGTACTGGGAAGCTTTATGAATTTTCAAGCAAAAGCATGGAGCACACCCTTTCAAGGTACGGTACTAGAAGTCTTGATTTGAATAATGGATCAGAGCAGCAGCAACAACGACAACCTAGTGATGAGCCTCCTCCAGCAGaagTTGTGGAGCCTGATACTGCTCTTCTGCAAGAAGAAGTAACAAAACTTCGTTCAGCTTACTTAAGGATGAGTGGTAAGGAGCTTGATGGATTGGGCCTTAAAGAACTGCAGCACCTAGAAAATCAACTGTGTGAAGGGATTTGTGCTGTCAAAAACAAGAAGGAACAAGTGCTATTTGAACAGCTTAAGAGATCCAGGTTACAGGAGCAAAAGGCTATGATGGAGAATGAAGCGCTTCGCAAACAACTTGAGGAGATAGAAAACAGAAGAAAGGCAAAGTGCCTTGAATTTCAATCATTGGATAGGACAATTTCCGTCAACGGTTCAAAACCCCTTTTCAATTTTGCTTCAGAGGATAATGAGATTTCAGATACTTCTTTGCAGTTAGGGTTGTCATCAGATTACGGTCTCAAAAGGAAAGCTTTGAAGATAGAACCTTGCAACGACTCGGGAAGTCAAGTGGCTTCACAGTGA 762 0.4068 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIYSGTGKLYEFSSKSMEHTLSRYGTRSLDLNNGSEQQQQRQPSDEPPPAEVVEPDTALLQEEVTKLRSAYLRMSGKELDGLGLKELQHLENQLCEGICAVKNKKEQVLFEQLKRSRLQEQKAMMENEALRKQLEEIENRRKAKCLEFQSLDRTISVNGSKPLFNFASEDNEISDTSLQLGLSSDYGLKRKALKIEPCNDSGSQVASQ 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01838 253 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Tsu01g01838 253 Pfam K-box region 101 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu01g01838 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu01g01838 253 SUPERFAMILY SRF-like 2 72 IPR036879 GO:0003677|GO:0046983
Tsu01g01838 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu01g01838 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 240 - -
Tsu01g01838 253 Coils Coil 158 192 - -
Tsu01g01838 253 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Tsu01g01838 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu01g01838 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu01g01838 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu01g01838 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu01g01838 253 PANTHER BNAC04G24260D PROTEIN 1 240 - -
Tsu01g01838 253 MobiDBLite consensus disorder prediction 72 90 - -
Tsu01g01838 253 MobiDBLite consensus disorder prediction 72 97 - -
Tsu01g01838 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Tsu01g01838 253 ProSiteProfiles K-box domain profile. 95 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01838 Tsu-Chr1 18464357 18467700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01838 1 227 MADS-box Gene Family AT5G13790 46.781 1.49e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu01g01838 K-box 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01838 - - gmx:100792278 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01838 01 18464357 18467700 Tsu01g01838 01 18464357 18467700 ECH