Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01832 ATGGAGGGTTTTCTCAACCCCAAGGATTTCGAATTGGAAAACAAGGATCGTTCAATCGAAGCTCTGAGTAGATGGAGAGATGCCGTTTATTTGGTCAAGAATCCTCGCAGAAGGTTTCGCCACGTTGCAGATCTAGTCAAACGTCAAAAAGcagaagaaaatcaaaagaaaattcagGGGAGGATTCGCACTATTATCAACGTTCAACGAGCTGCACTGCATTTTACTGATGCTATTAGTAATACACCTGAATTCAATGTATCAGAAAAGACAAGAGCAGCTGGTTATGGTATCGAACCAGATGATATTGCATCAGTTATTCGAAGCCATGATTACAAGAACTATAAAAAAGTTGGTGAAGTTCAAGGGGTTATAAGTAAACTTTCAGTCTCAGTCGATGAAGGTGTCAGTCAAGACAGTATACAGAGTAGGCAAGAGATTTATGGACTCAACCGATATACCGAGAAGCCATCTAAAAGCTTTCTGATGTTCGTTTGGGATGCACTGCATGACTTGACACTGATCATTCTAATGGTTTGTGCTTTAGTTTCCATAGGCATAGGGCTTCCCACTGAAGGGTTCCCAAAGGGTTGTTATGATGGTCTTGGAATCTTACTTAGTATATTCTTGGTAGTCACTGTTACTGCTGTAAGTGACTACCAGCAATCTCTACAGTTCTTAGATTTGgacaaagagaagaaaaagatcTCTATTCATGTTACCAGGGATGGTAAAAGACAGAAGGTTTCAATTTACGACTTGGTAGTAGGAGATATAGTTCATTTGTCTACTGGTGATCAAGTTCCAGCTGATGGAATTTTTATACAAGGATATTCATTGCTAATTGATGAATCAAGTTTGTCAGGTGAGAGCGAACCTGTAAATATAGACAGTCGAAGACCTTTTCTTCTTTCGGGAACCAAAGTGCAAGACGGTCAAGGGAAGATGATAGTTACAACTGTTGGCATGAGGACTGAATGGGGGAAGTTGATGGAAACTTTGAGTGAGGGGGGAGAGGATGAGACGCCACTTCAGGTGAAATTGAATGGAGTTGCTACAGTTATTGGTAAAATCGGTTTAACTTTTGCTGTGCTGACATTTTTGGTGTTGACAGTACGGTTTGTGATTGAAAAAGCAGTTCATGGAAGCTTCAGTAGTTGGTCTTCAGAGGATGCGCTGAAGCTACTAGACTACTTTGCTATTGCTGTAACCATAATTGTTGTTGCGATTCCTGAAGGATTACCTTTAGCTGTAACACTCAGTCTTGCTTTTGcaatgaaaaaattgatgaatgATAGGGCTCTTGTGAGACATCTTTCTGCTTGTGAAACTATGGGGTCAGCTAGTTGCATTTGTACCGATAAGACAGGAACATTGACAACCAACCATATGGTGGTCGATAAAATTTGGATATGCGAAAAGACCACAGAGATAAAAGATGATGAGAGTACTGAAAAATTGAAATCAGAGATATCTGATGAAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAGAATACTTCCTCAGAAGTAGTTAAAGACAAAGAAGGAAAGCAGACAATATTGGGAACACCAACAGAATCTGCATTATTGGAATTTGGCTTGGTTTCAGGTGGTGATTTTGATGCACAGCGTAAATCTTGTAAGATACTTAAGGTTGAGCCTTTCAATTCCGACAGGAAGAAGATGTCTGTACTCATAGGTCTTCCCGATGGAGGGGTTCGAGCTTTCTGCAAAGGTGCATCGGAAATAGTGTTGAAAATGTGTGATAAAATAATTGATAGTAATGGAACAACTGTTGATCTTCCTGAAGAGAAAGCAAAGATTGTGAATGACATTATAGATGGATTTGCCAATGAAGCATTGAGAACTCTTTGTTTGGCTGTCAAAGAGTTAGATGAAACACAAGGCGAAACCAGCATCCCTGAAAATGGATACACTCTGATAGCCATTGTGGGAATCAAGGATCCTGTGCGCCCTGGAGTTAAGGAAGCTGTTCAAAAATGTTTAGCAGCTGGAATAAGTGTCCGCATGGTCACCGGTGATAACATAAATACAGCTAAGGCTATAGCTAGAGAATGTGGTATACTTACTGAAGGTGGTGTAGCTATAGAAGGACCAGAATTTCGCAATTTATCTCCAGAACAAATGAAGGATATCATACCAAGAATTCAGGTAATGGCACGATCGTTACCTCTTGACAAGCATACCTTGGTAACCCGTTTGAGGAATATGTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGACTTGCCATGGGAATTGCTGGAACCGAGGTTGCCAAAGAAAATGCTGACGTGATTATAATGGATGACAACTTCACTACTATTGTCAAAGTGGCCAAATGGGGACGGGCCATATACATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATGTTGTTGCTCTGATTACTAACTTTGTATCTGCCTGCATCACTGGAGCTGCTCCACTAACAGCTGTTCAATTGCTTTGGGTTAACTTGATTATGGACACTCTTGGTGCATTAGCACTGGCTACTGAACCTCCTAATGATGGACTTATGGAAAGACAACCAGTTGGAAGGAAAGCAAGTTTTATTACCAAACCTATGTGGAGGAATATCTTTGGTCAAAGTGTGTATCAACTAATTATCCTCGGGGTTCTAAATTTTGAGGGGAAGAGGCTACTTGGACTAAGCGGCTCAGATGCAACTGCAGTACTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTGTTCAATGAGATAAACAGCAGAGAAATTGAAAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTTTAAGTGTTATTATCGCCACAGCGGTATTTCAAGTAATCATAGTTGAGTTCCTAGGAGCATTTGCCAGCACAGTGCCTCTAACCTGGCAATTCTGGTTACTCAGTCTGGTGTTTGGTGTACTTAGCATGCCTTTAGCTGCTATCCTCAAATGCATACCAGTTGAAAGAGATACCACAAAGCAGCATCATGATGGTTATGAGGCACTTCCTTCTGGTCCTGAAAGTGTGTGA 3111 0.3995 MEGFLNPKDFELENKDRSIEALSRWRDAVYLVKNPRRRFRHVADLVKRQKAEENQKKIQGRIRTIINVQRAALHFTDAISNTPEFNVSEKTRAAGYGIEPDDIASVIRSHDYKNYKKVGEVQGVISKLSVSVDEGVSQDSIQSRQEIYGLNRYTEKPSKSFLMFVWDALHDLTLIILMVCALVSIGIGLPTEGFPKGCYDGLGILLSIFLVVTVTAVSDYQQSLQFLDLDKEKKKISIHVTRDGKRQKVSIYDLVVGDIVHLSTGDQVPADGIFIQGYSLLIDESSLSGESEPVNIDSRRPFLLSGTKVQDGQGKMIVTTVGMRTEWGKLMETLSEGGEDETPLQVKLNGVATVIGKIGLTFAVLTFLVLTVRFVIEKAVHGSFSSWSSEDALKLLDYFAIAVTIIVVAIPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICEKTTEIKDDESTEKLKSEISDEVLSILLQAIFQNTSSEVVKDKEGKQTILGTPTESALLEFGLVSGGDFDAQRKSCKILKVEPFNSDRKKMSVLIGLPDGGVRAFCKGASEIVLKMCDKIIDSNGTTVDLPEEKAKIVNDIIDGFANEALRTLCLAVKELDETQGETSIPENGYTLIAIVGIKDPVRPGVKEAVQKCLAAGISVRMVTGDNINTAKAIARECGILTEGGVAIEGPEFRNLSPEQMKDIIPRIQVMARSLPLDKHTLVTRLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVKVAKWGRAIYINIQKFVQFQLTVNVVALITNFVSACITGAAPLTAVQLLWVNLIMDTLGALALATEPPNDGLMERQPVGRKASFITKPMWRNIFGQSVYQLIILGVLNFEGKRLLGLSGSDATAVLNTLIFNSFVFCQVFNEINSREIEKINIFRGMFDSWIFLSVIIATAVFQVIIVEFLGAFASTVPLTWQFWLLSLVFGVLSMPLAAILKCIPVERDTTKQHHDGYEALPSGPESV 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01832 1036 PANTHER CALCIUM-TRANSPORTING ATPASE 7 1020 - -
Tsu01g01832 1036 Pfam Ca2+-ATPase N terminal autoinhibitory domain 8 49 IPR024750 GO:0005516
Tsu01g01832 1036 Gene3D - 465 654 IPR023299 GO:0000166
Tsu01g01832 1036 Gene3D - 655 770 IPR023214 -
Tsu01g01832 1036 ProSitePatterns E1-E2 ATPases phosphorylation site. 454 460 IPR018303 -
Tsu01g01832 1036 SUPERFAMILY HAD-like 451 858 IPR036412 -
Tsu01g01832 1036 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu01g01832 1036 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu01g01832 1036 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu01g01832 1036 Gene3D - 210 310 - -
Tsu01g01832 1036 PANTHER CATION TRANSPORTING ATPASE 7 1020 - -
Tsu01g01832 1036 SUPERFAMILY Calcium ATPase, transmembrane domain M 119 1014 IPR023298 -
Tsu01g01832 1036 SMART Cation_ATPase_N_a_2 117 189 IPR004014 -
Tsu01g01832 1036 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 112 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Tsu01g01832 1036 SFLD p-type atpase 434 806 IPR044492 -
Tsu01g01832 1036 Pfam E1-E2 ATPase 236 430 - -
Tsu01g01832 1036 Pfam Cation transport ATPase (P-type) 508 592 - -
Tsu01g01832 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 718 841 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu01g01832 1036 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 204 478 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu01g01832 1036 SUPERFAMILY Calcium ATPase, transduction domain A 237 333 IPR008250 -
Tsu01g01832 1036 Gene3D - 771 1019 - -
Tsu01g01832 1036 Gene3D - 167 464 - -
Tsu01g01832 1036 Gene3D - 17 78 - -
Tsu01g01832 1036 SFLD C1.7: P-type atpase like 434 806 - -
Tsu01g01832 1036 PRINTS P-type cation-transporting ATPase superfamily signature 283 297 - -
Tsu01g01832 1036 PRINTS P-type cation-transporting ATPase superfamily signature 452 466 - -
Tsu01g01832 1036 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Tsu01g01832 1036 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Tsu01g01832 1036 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Tsu01g01832 1036 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Tsu01g01832 1036 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Tsu01g01832 1036 CDD P-type_ATPase_Ca_PMCA-like 141 886 - -
Tsu01g01832 1036 Pfam Cation transporter/ATPase, N-terminus 120 184 IPR004014 -
Tsu01g01832 1036 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 458 662 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01832 Tsu-Chr1 18382911 18391090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01832 61 1033 Primary Pumps ATPases AT3G57330 73.073 0.0 1479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01832 K01537 - gmx:100791934 1671.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g01832 01 18382911 18391090 Tsu01g01832 01 18382911 18391090 ECH