Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01829 ATGAGGAAGAAAGTTACTCCATCTTCTACTTATCATAATCCATGTGCTTCTTATTATGATGATAATAAGCACACAAAAATTAACTTACAAGGTTCAACAAGAATATACAAATGTGATTTGTGCGGCAAAATCTTCAGCTCCGGCAACGCTCTCCGTGGCCATAAAACATCTCACCGTTCGAAGAACCTTCATCAACCACTAATCAAGAAACAAAAGACACATCATGCTATCAATAATGGCACCACCATCAACATCACTTGGTCCTTATCTTCTTCTCCTCACCTTGATGACAATGAGAAACAAGAACATGGTTGTTGTTGTCAAGTTTGTAAGAAGGTTTTTCCGTCTAACAAGGCTTTATATGGTCACATGAGATTACATAAAAAAGATGGGAATGTTATTCATCTACAACCAACTACATCCTCCTAG 429 0.373 MRKKVTPSSTYHNPCASYYDDNKHTKINLQGSTRIYKCDLCGKIFSSGNALRGHKTSHRSKNLHQPLIKKQKTHHAINNGTTINITWSLSSSPHLDDNEKQEHGCCCQVCKKVFPSNKALYGHMRLHKKDGNVIHLQPTTSS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01829 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Tsu01g01829 142 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Tsu01g01829 142 Gene3D Classic Zinc Finger 35 127 - -
Tsu01g01829 142 Pfam C2H2-type zinc finger 106 129 - -
Tsu01g01829 142 Pfam C2H2-type zinc finger 36 61 - -
Tsu01g01829 142 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Tsu01g01829 142 SUPERFAMILY beta-beta-alpha zinc fingers 34 127 IPR036236 -
Tsu01g01829 142 ProSitePatterns Zinc finger C2H2 type domain signature. 105 127 IPR013087 -
Tsu01g01829 142 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 22 129 IPR044653 GO:0003700
Tsu01g01829 142 SMART c2h2final6 36 58 IPR013087 -
Tsu01g01829 142 SMART c2h2final6 105 127 IPR013087 -
Tsu01g01829 142 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 22 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01829 Tsu-Chr1 18366783 18367211 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01829 36 127 C2H2 Transcription Factor Family AT3G19580 34.343 1.39e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01829 zf-C2H2_6 2.3e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01829 - K09228 mtr:MTR_1g052185 126.716