Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01828 ATGAGGAAGAAAGTTACCCCATATTCTACTTATTATAATCCATGTGCTTATTATCACACTAAAATTAACTTACAAGGTTCAACAAGAATATACAAATGTGATTTGTGCGGCAAAATCTTCAACTCCGGTAACGCACTCGGTGGCCATAAAACATCTCACCGTTCACAGAACCTTCGTCAACCACTAATCAAGAAACAAAAGACACATCATGATATCAATAATGGCACCACCATCAACATCACTTGGTCCTTATCTTCTTCTACTCAccatgatgatgataatgagaaACAAGAACATGGTTGTTGTTGTCAAGTTTGTAAGAAGGTTTTTCCATCTAACAAGGCTTTATATGCACACATGAGATTACATAAAAGAGATGAGAATGTTATTCATCTACCACCAACTACAACTATATCCTCTTAG 423 0.3428 MRKKVTPYSTYYNPCAYYHTKINLQGSTRIYKCDLCGKIFNSGNALGGHKTSHRSQNLRQPLIKKQKTHHDINNGTTINITWSLSSSTHHDDDNEKQEHGCCCQVCKKVFPSNKALYAHMRLHKRDENVIHLPPTTTISS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01828 140 ProSitePatterns Zinc finger C2H2 type domain signature. 101 123 IPR013087 -
Tsu01g01828 140 ProSiteProfiles Zinc finger C2H2 type domain profile. 31 58 IPR013087 -
Tsu01g01828 140 SUPERFAMILY beta-beta-alpha zinc fingers 29 123 IPR036236 -
Tsu01g01828 140 Pfam C2H2-type zinc finger 31 56 - -
Tsu01g01828 140 Pfam C2H2-type zinc finger 102 124 - -
Tsu01g01828 140 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Tsu01g01828 140 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 28 124 - -
Tsu01g01828 140 ProSitePatterns Zinc finger C2H2 type domain signature. 33 53 IPR013087 -
Tsu01g01828 140 SMART c2h2final6 101 123 IPR013087 -
Tsu01g01828 140 SMART c2h2final6 31 53 IPR013087 -
Tsu01g01828 140 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 28 124 IPR044653 GO:0003700
Tsu01g01828 140 Gene3D Classic Zinc Finger 28 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01828 Tsu-Chr1 18364563 18364985 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01828 9 123 C2H2 Transcription Factor Family AT3G49930 35.043 2.49e-11 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g01828 zf-C2H2_6 6.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01828 - - mtr:MTR_1g052185 133.265