Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01824 ATGGATTACACTAACAATTCCAATCACTACCTTTCCTACTCCACTCTCTTCAATCTCCAGTCTTTGGTGAATTTTCAACTTCCACaacatgatgatgaatttgattaTTACGGGAATAGTAGTCAGGATGAAGATGAAAGCAGAGATAGTCGTCGAGGTGGTGGGGGGGCAATTGGAAATCACAGTAACGGGAATGTGCATTCAAAGGATGTGAATTTTTCGAAGAAGAAAAGAGTGCGATCTCAAAACAGTGATGACGAGGACAAAGGAAGTTTTTACGGGGCATACGTGACAGAGGAGCAATATCGCTCAATGTTGGGTGACCATGTTCATAAATACAAGAGGAGGTCTAAGGATACTACCTCTAGTCATGCACAAAATCGGGGTGCTGTCCCGCTTGtcaaaagtaataataatggATTAAAAGCTCAGAAGTTAGGGAATGATAACCGGGGAGGATTGCAAACTGCTGAGACTTTATCTGAATGGTTATATAATTCCAATTCTCAGAAACATGGAAACTACCGTAATGCAGATTTATTGCAAAGAAATGTCACTGATAGGGTTATGTATGAACCTTCTATTTTAGAAATTGGTGATGGTATCACATACAAGATTCCTCCAATTTACGATAAACTGGCTACAACGCTAAACCTTCCAAGCTTCTCAGATATCCATGTGGATGAATTTTACTTGAAGGGTACCTTGGATTTGGGGTCATTGGCTGCAATGATGGCTGCTGACAAAAGGTTAGGAAATAAAATCCGAGCAGGGATGGGGGAACCCCTATTTCAATATCAATCACTTCAGGAACGAATAAAGGCCATGTCAGCTTCTAATTCACCTCAAAAATTTAGTCTGAATGTTTCTGATATTGGTTTAAATTCATCCATTCCGGAGGGGGCTGCTGGAAGCATAAAGCGGTCTATTTTGTCCGAGGGTGGTGTATTGCAGGTTTATTATGTAAAGGTTTTGGAAAAAGGTGACACTTACGAGATCATTGAGCGAAGCCTACCCAAGAAGCAAAAGATAAAGAAAGATCCTGCTTCAATTGAGAAGGAGGAAATGGATAGAATTGGAAAGATTTGGGTAAACATTGTAAGAAGAGACATACCAAAGCATCATAGGAATTTTACTACTCTTCATCGAAAGCAACTTATTGATGCCAAGAGGTGCTCAGAGTACTGTCAAAGAGAGGTTAGATTGAAAATTAGTAGATCACTCAAATGGAATAGGGGGGCTAGCATTCGCACCCGGAAACTAGCCAGAGACATGTTGCTGTTCTGGAAACGAATAGATAAGGAGATGGCCGAAGTGAGGAAAAGAGAGGAGAAAGAAGCTGCTGAAGCTTTAAGATGTGAACAGGAGCTCCGAGAAGCAAAGAGACAGCAGCAAAGGCTTAATTTTCTGATACAACAAACTGAGCTCTACAGTCACTTTATGCAGAACAAGTCAGATTTACTATCTTCGGAAGCTTTACCCATGGCAGAGGAAAAAACAAATGATCAAGATGCACCGTTCATCTCATCAGATGCTGGGACTAACGAGGAAGAAGATCCAGAAGAGGCTGAATTGAAGAAAGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTTTAAGCAGAAAAAGTTGACTAATGCTTTTGACAGTGAATGTTTGAGGCTGCGGCAGGTGGGTGAAGCTGATCCACTTATGCAGGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCATCAACCATGCCAGTGGCATCCACAGTTCAAACACCTGAATTATTTAAAGGTTGTCTTAGAGAATACCAGCTGAAAGGTCTCCAATGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAGACCATACAAGCTATGGTTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGGCCTTTTCTGGTTGTTGCACCTGCTTCTGTATTGAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGGACTTAAAAGACTTCCGTATTGGGGAGGGCTTTCAGAGAGGACAGTACTAAGGAAAAGTATTAACCCAAAGGACCTTTATCGTAGGGAAGCTAAATTTCACGTTCTCATCACAAGCTATCAGCTATTAGTATCCGATGAGAAGTATTTTCGTCGCGTGAAATGGCAGTACATGGTTTTAGACGAAGCGCAGGCAATTAAAAGTGCAAACAGTATAAGATGGAAGACACTTCTCAGCTTTAATTGCCGGAATCGTCTACTGCTGACTGGTACACCTATTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTGCACTTCATCATGCCAACTTTATTTGACAGCCACGAGCAGTTTAACGAGTGGTTCTCAAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAGCTTAATAGATTGCATTCAATTCTAAAACCTTTCATGCTACGGCGTGTTAAAAAAGACGTAGTTTCCGAGTTGACACAAAAAACTGAGGTTATGGTGCATTGCAAGTTGAGCTCTCGGCAGCACGCTTTCTACCAAGCAATTAAGAACAAGATATCTCTGGCTGAACTATTTGATAGTAATCGTGGGCAGCTTAACGAGAAGAAAATTCTAAATTTGATGAATATTGTCATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAATGAGGGAAACACATATTTTTACTTTGGTGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGCGAGTTGGAGGATGTTTACTATGCTGGAGGTCTCAACCCCATATCATTTCAGATACCAAAGCTTGTCTATCAGGATATCATGCAAAGCTCTGAGACTCTCAGTTCAGCTGTTGGTCGTGGTGTCTCTAGAGAAACTTTTCAgaaacattttaatatttttgaaccAGAAAATGTCCATCGATCTATTTTCTCAGAAGAAACAAATGTTGAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCGCAAGAGGTGGCATTTTTGGCCACTGGTTCTTTCATGGAGCGACTATTATTTTCTATGACGAGATGGGAACAAAATGTCTTTGACGAAGTTGGAGACTTTCTTACAGAATACATTGTAGATGATCCTGAATGTAATTTCCTCGAAAAAGGTAAAGTGAGAGCTGTTACAAGAATGTTATTGCTACCGTCCAGATCTGAGACcaagtttcttcaaaaaaggtTTGCAACTGGGCCCTCCCATGCCCCTTTTGAGGGCTTGGTAGTCTCACATCAGGATAGGCTTTTATCTAACGCAAGGCTTCTTCACTCAGCATACACATACATCCCACCAACAAGAGCTCCCCCTATTGATGCTCATTGCTCTGATAGAAACTTCTCGTATAAAAAGATTGAAGAATTACACGATCCTTGGGTTAAGAGgttttttgttggatttgcgcGTACATCTGAATGTAATGGGCCTAGAAAGCCCAATCACCATCATGCTCATTATTTAATTCAAGAGATCGATTCTGAATTACCTGTTTCACAGCCTGCGCTGCAGTTAACTCACAGTATTTTTGGCTCCACACCACCTATGCGGAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAACTTCAAACCCTTGATATATTACTGAAACGCTTACGCGCAGGAAATCATCGTGTTCTCTTGTTTTCTCAGATGACTAAGATGCTGAATATTTTGGAGGACTATATGAACTACAGAAAATACAAGTATTTTAGACTTGATGGGTCGTCATCAATTCAGGATCGCAGAGATATGGTCAAAGACTTCCAACAAAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCGACATTGGATCTTCAAGCTATGGATAGAGCCCATCGTTTGGGTCAGACAAGAGATGTTACGGTTTATCGACTTATATGTAAAGAGACTGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGTACCGTACAAAACCTTGTCATGACTGGTGGCTCTGTTGGTGGTGATCTTTTAGCTCCCGAGGATGTTGTATCTTTGCTTTTGGATGATGTCCAATTGCAACAAAAATTTAAGGAAATCCCTCTCCAGGTAAAGGATaggcaaaagaaaaaacaatctATGAAGGGCATTCGAGTAAGCGAAGATGGTGTTGCATCTCTGGAAGATTTGACAAACTCTGTAGCTCAGAGTAATGCAGATAATGATGGTTTCGTGGAACCGGAGGGGACAAAGTCCAGTAATAAAAAGAGAAAAGCAACTTCAGACAAGCAAACGTCAAGAACAAAGAATTCTAAAAAGATGAGTGAACTTGGCAATATGCCTATAGATGAACCGGATGATGCCCATCTAAATAATGATTCAGCGGGCCAGAAACCAAAGAGACCAAAGCGGACAAAGAAGAACGTAAATAAAAAGCTTGAAGAAGATTTTATTGGGACAGTCACCATTTTACCAGAGCAGACCCAATTTCCTCGTTCACAAGATTTCAGTTTTGGAGGTTCTAAAGCAGAGACAGTTCAAGACTCATGA 4629 0.4012 MDYTNNSNHYLSYSTLFNLQSLVNFQLPQHDDEFDYYGNSSQDEDESRDSRRGGGGAIGNHSNGNVHSKDVNFSKKKRVRSQNSDDEDKGSFYGAYVTEEQYRSMLGDHVHKYKRRSKDTTSSHAQNRGAVPLVKSNNNGLKAQKLGNDNRGGLQTAETLSEWLYNSNSQKHGNYRNADLLQRNVTDRVMYEPSILEIGDGITYKIPPIYDKLATTLNLPSFSDIHVDEFYLKGTLDLGSLAAMMAADKRLGNKIRAGMGEPLFQYQSLQERIKAMSASNSPQKFSLNVSDIGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKIKKDPASIEKEEMDRIGKIWVNIVRRDIPKHHRNFTTLHRKQLIDAKRCSEYCQREVRLKISRSLKWNRGASIRTRKLARDMLLFWKRIDKEMAEVRKREEKEAAEALRCEQELREAKRQQQRLNFLIQQTELYSHFMQNKSDLLSSEALPMAEEKTNDQDAPFISSDAGTNEEEDPEEAELKKEALKAAQEAVFKQKKLTNAFDSECLRLRQVGEADPLMQEVAGASNIDLQTPSTMPVASTVQTPELFKGCLREYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPGLKRLPYWGGLSERTVLRKSINPKDLYRREAKFHVLITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTQKTEVMVHCKLSSRQHAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERNEGNTYFYFGEIPNSLPPPPFGELEDVYYAGGLNPISFQIPKLVYQDIMQSSETLSSAVGRGVSRETFQKHFNIFEPENVHRSIFSEETNVESGNFGFTHLMDLSPQEVAFLATGSFMERLLFSMTRWEQNVFDEVGDFLTEYIVDDPECNFLEKGKVRAVTRMLLLPSRSETKFLQKRFATGPSHAPFEGLVVSHQDRLLSNARLLHSAYTYIPPTRAPPIDAHCSDRNFSYKKIEELHDPWVKRFFVGFARTSECNGPRKPNHHHAHYLIQEIDSELPVSQPALQLTHSIFGSTPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFSQMTKMLNILEDYMNYRKYKYFRLDGSSSIQDRRDMVKDFQQRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTRDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKEIPLQVKDRQKKKQSMKGIRVSEDGVASLEDLTNSVAQSNADNDGFVEPEGTKSSNKKRKATSDKQTSRTKNSKKMSELGNMPIDEPDDAHLNNDSAGQKPKRPKRTKKNVNKKLEEDFIGTVTILPEQTQFPRSQDFSFGGSKAETVQDS 1542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01824 1542 Coils Coil 434 473 - -
Tsu01g01824 1542 MobiDBLite consensus disorder prediction 496 523 - -
Tsu01g01824 1542 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 609 780 IPR014001 -
Tsu01g01824 1542 SMART ultradead3 593 788 IPR014001 -
Tsu01g01824 1542 CDD SF2_C_SNF 1205 1337 - -
Tsu01g01824 1542 MobiDBLite consensus disorder prediction 70 87 - -
Tsu01g01824 1542 ProSiteProfiles DBINO domain profile. 362 487 IPR020838 GO:0003677
Tsu01g01824 1542 MobiDBLite consensus disorder prediction 1426 1505 - -
Tsu01g01824 1542 Gene3D - 1183 1473 IPR027417 -
Tsu01g01824 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 825 IPR027417 -
Tsu01g01824 1542 Gene3D - 592 834 IPR038718 -
Tsu01g01824 1542 MobiDBLite consensus disorder prediction 111 135 - -
Tsu01g01824 1542 PANTHER HELICASE SRCAP-RELATED 16 1506 - -
Tsu01g01824 1542 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1217 1401 IPR001650 -
Tsu01g01824 1542 Pfam Helicase conserved C-terminal domain 1217 1326 IPR001650 -
Tsu01g01824 1542 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 827 1395 IPR027417 -
Tsu01g01824 1542 MobiDBLite consensus disorder prediction 33 92 - -
Tsu01g01824 1542 SMART helicmild6 1243 1326 IPR001650 -
Tsu01g01824 1542 Pfam SNF2-related domain 612 899 IPR000330 GO:0005524|GO:0140658
Tsu01g01824 1542 Gene3D - 835 904 IPR027417 -
Tsu01g01824 1542 MobiDBLite consensus disorder prediction 1518 1542 - -
Tsu01g01824 1542 PANTHER CHROMATIN-REMODELING ATPASE INO80 16 1506 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Tsu01g01824 1542 Pfam DNA-binding domain 358 485 IPR020838 GO:0003677
Tsu01g01824 1542 MobiDBLite consensus disorder prediction 1442 1463 - -
Tsu01g01824 1542 MobiDBLite consensus disorder prediction 1472 1492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01824 Tsu-Chr1 18315433 18327301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01824 650 898 RAD5 or RAD16-like Gene Family AT1G61140 24.516 4.02e-12 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu01g01824 SNF2_N 1.2e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01824 K11665 - gmx:100780615 2432.91