Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01823 ATGGAGAAAGATAACGACTATACGACACCAAGTTTCAACACACTTGACTACACACAAGATCATCAACAATATGAACAACTTATGAAGTATCGAGTTGGCGAAACTTCGGGCGAAAACAACGGGATGGTGGTGGATAATTACATGCCTCAAACACAAACTTCTGGAGGTTTTTATGGTGCAAATAATTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAGTTTGCAGCTTTAAACCGGGAAGAATCTGATCCGGTATATTTCATGAAGTTTCCGGTGTTAAACAACAAGatggaaaatcaaaacatgatGTTGAGTGGTGGTGATGGGATAGGTGAAAATGAATCAAGAGATGATCATCAACAAGAACAGTACGAAGAAATTAATCGGGTTTCTGAGGAGAACAACGTCTCGGTGCAAGTAGTACAAGAGAACAATAAGAAGAGGAAGAGACCAAGAAGTGTTAAGACAAGTGAAGAAGTCGAGAGTCAACGGATGACTCACATCGCAGTTGAAAGGAATCGAAGGAAGCAAATGAATGAACATCTTCGTGTCCTCAGATCCCTCATGCCTGGTTCATACGTCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGAGCTATAGAGTTTGTGAGGGAATTGGAACAACTTCTTCAATGTTTAGAATCACAAAAGAGAAGGAGATTATTAGGAGAAGCACAATCAAAACAAGTTGAGGATTCAGCTGCATTTTTTCCAGCTACTAATTTACCAACAAATGATCAGATGAAGCTAGTTGAGATAGAAACTGGACTTCAAGAAGAAACAGCTGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTCAAACTTCTTGGATTTGATGCAATGATTAAAATCTTATCAAAGAGAAGGCAAGGACAGTTGATCAAGATCATTGCTGCACTTGAAGATATGCAGCTTATTATCCTTCACACCAATATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAgGTAGCTAGTGATACAAGGTTCACAGCAGAAGATATAGCAAGTTCCGTTCAGCAGATACTCAGTTTTATTCATGCAAACACCACCACCATgtga 1095 0.3817 MEKDNDYTTPSFNTLDYTQDHQQYEQLMKYRVGETSGENNGMVVDNYMPQTQTSGGFYGANNSFDKMSFADVMQFAALNREESDPVYFMKFPVLNNKMENQNMMLSGGDGIGENESRDDHQQEQYEEINRVSEENNVSVQVVQENNKKRKRPRSVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSKQVEDSAAFFPATNLPTNDQMKLVEIETGLQEETAESKSCLADVEVKLLGFDAMIKILSKRRQGQLIKIIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIASSVQQILSFIHANTTTM 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01823 364 MobiDBLite consensus disorder prediction 144 166 - -
Tsu01g01823 364 Pfam Helix-loop-helix DNA-binding domain 164 215 IPR011598 GO:0046983
Tsu01g01823 364 MobiDBLite consensus disorder prediction 104 166 - -
Tsu01g01823 364 Gene3D - 154 229 IPR036638 GO:0046983
Tsu01g01823 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 229 IPR036638 GO:0046983
Tsu01g01823 364 CDD bHLH_AtFAMA_like 166 233 - -
Tsu01g01823 364 MobiDBLite consensus disorder prediction 112 130 - -
Tsu01g01823 364 SMART finulus 169 220 IPR011598 GO:0046983
Tsu01g01823 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 214 IPR011598 GO:0046983
Tsu01g01823 364 PANTHER TRANSCRIPTION FACTOR FAMA 27 362 IPR044283 GO:0003700|GO:0010052
Tsu01g01823 364 PANTHER TRANSCRIPTION FACTOR FAMA 27 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01823 Tsu-Chr1 18309455 18312078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01823 4 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 54.394 3.87e-125 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g01823 HLH 7.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01823 - - gmx:100813515 444.121