Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01816 ATGTGCATGATTCAGTACATAGccatcttcatcctcttcttCATATACATCCACTACTGGAGACGCAATAGAGATGAAATTGTTCCGAATTGGCCAATAATTGGTATGGTACCGTCTTTTGTGCGTCATGTGTCCGATTTTAATGATTTTGCAACCTTAGTTCTTAAGCGTCATGGAGGAACCTTTCGATTTCAAGGGCCCTGGTTCACAAACACAAGCTTTATAGTTACCGCTGATCCAATGAACGTCGACCACATCTCTGGCAAGAATTTCGGTAACTACGGGAAAGGATCAAACTTCcaagaaatatttgatttttttggagaTGGTATTATAAATTCTGATCATGATTGGAAAGAGAAGAGGACAATGTACCATTTAATTCTCAAAGGGAAAAGCTTCAAGAAAATGCTGCATCAAACCATTCAGAAAAAGGTTGAGAACTGCTTACTACCATTTCTTAAAGATGTATGTGAAGAAGGTGTTGAAGTGGACTTGCAAGATGCCTTGAATAGGTTCACTTTTGACACCAACTGCAACATTGTCTTTGGATTTGATCCTAACACTCTTCCAAATAAGTTCAGTGAGCTTAGAGAAATTGCTTATCAAAAATCTCTTCCTGTCATAGAGGAAGTAATATTCTATAGACACTTCATTCCAACTTGTCTATGGAGGCTGCAGAAATGGATCCATGTTGGTCAAGAAAAGAAGTTTAAGATAGCCCAACAAAATCTTGACAGATTCTTGTATGAAAGTATAACATTTTCCAAACAAGAGCAAAGCAAGTCtgaaaaaattgatgaatgCTATTTTGATTTGGTAGAAACACTTGAGAAAGAAGGATATGGAAAGGGGAAAATAGGTGAGAAGTTTCTTAGAGACATTATACTTAATATCCTAGTAGCAGGAAATGGCACAATAAGTTCAGGTCTTAGTTGGTTTTTCTGGCTTGTTTCAACTCACCCTATTGTAGAAGCCAAAATTATTCAAGAGATTAAAGATAATTGTATCACTCAAAATGAGAATTGGAGTATATCAAAGGTGGAAGACCTTGATAAGCTAGTCTATCTCCATGGAGCTATATGTGAAGCCTTGAGGCTTTATCCTCCTATACCTTTTGAGCATATGTGCGCAATCAAATCGAATATACTACCTAGCGGAGATGGTGTTAGTGAAAATACAATGGTAATGTACTCTTTGTATGCAATGGGAAGGATGGAGCAAATATGGGGAGAAGACTGCATGGAATTTAAGCCTGAGAGATGGATATCAGAGACAGGACACATTATACGTGTACCATCTTACGAGTTCATAGCTTTCCATACAGGTCCTCGAAGTTGTTTGGGTAAAGATATTAGCTTCTTTCAAATGAAGATGGTCGCAGCTAGTATATTATGGAAGTTTCACATACAGCCTAACATTGCAGATAAGGGGATTTGGAAGCATGACGCTAGTGGTGGATACTCGGTCAGTAGCGCGTATCAATTGCTCACTACTAAGGAAATATTTGATGAGGTGGCGACCTCAGACTTGATATGGCATAAAAGGGTACCCTTGAAGGTTTCAGTTTTGGCTTGGAGGTTTGTTCGCAACAGGACCATCGATCTTGTTCAATTCTCTTATGCTTCAGGTGGTATGCAGACTCGCTGTTCTTTTTTGCAACTGATTTGGTTATGTTGTATCTGGGTTATGTGGACTGAGAGGAATAATCGAGTGTTTAAGGCTAAGGCCTCTACCGTTTCTCAAATGCTAGATAAGGTTAAGTTGCATTCTTATCATGGATGA 1785 0.3754 MCMIQYIAIFILFFIYIHYWRRNRDEIVPNWPIIGMVPSFVRHVSDFNDFATLVLKRHGGTFRFQGPWFTNTSFIVTADPMNVDHISGKNFGNYGKGSNFQEIFDFFGDGIINSDHDWKEKRTMYHLILKGKSFKKMLHQTIQKKVENCLLPFLKDVCEEGVEVDLQDALNRFTFDTNCNIVFGFDPNTLPNKFSELREIAYQKSLPVIEEVIFYRHFIPTCLWRLQKWIHVGQEKKFKIAQQNLDRFLYESITFSKQEQSKSEKIDECYFDLVETLEKEGYGKGKIGEKFLRDIILNILVAGNGTISSGLSWFFWLVSTHPIVEAKIIQEIKDNCITQNENWSISKVEDLDKLVYLHGAICEALRLYPPIPFEHMCAIKSNILPSGDGVSENTMVMYSLYAMGRMEQIWGEDCMEFKPERWISETGHIIRVPSYEFIAFHTGPRSCLGKDISFFQMKMVAASILWKFHIQPNIADKGIWKHDASGGYSVSSAYQLLTTKEIFDEVATSDLIWHKRVPLKVSVLAWRFVRNRTIDLVQFSYASGGMQTRCSFLQLIWLCCIWVMWTERNNRVFKAKASTVSQMLDKVKLHSYHG 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01816 594 Pfam zinc-binding in reverse transcriptase 488 533 IPR026960 -
Tsu01g01816 594 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 PANTHER CYTOCHROME P450 13 471 - -
Tsu01g01816 594 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Tsu01g01816 594 SUPERFAMILY Cytochrome P450 29 473 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 PANTHER CYTOCHROME P450 FAMILY PROTEIN 13 471 - -
Tsu01g01816 594 Pfam Cytochrome P450 29 472 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 PRINTS P450 superfamily signature 447 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 PRINTS P450 superfamily signature 359 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Tsu01g01816 594 Gene3D Cytochrome P450 23 490 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01816 Tsu-Chr1 18232118 18234849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01816 7 471 Cytochrome P450 AT2G23180 39.248 6.67e-128 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01816 - - mtr:MTR_1g035760 651.358