Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01799 ATGTCCCTTGAAGAGACTCTAAGATCTCTTTCCCTTGACTATCTAAACCTTCTAATCAATGGCCAAGCTTTTAGTGACGTCACTTTCCAAGTTGAAGGTCGTTTAGTTCATGCTCATCGATGCATCTTAGCAGCAAGGAGTCTTTTCTTTAGGAAATTCTTTTGTGGGCCTGACCCACCATCGGGATTAGACCCAACAGGAGGAGGAACATCTCGTCAACCAACAGTTAGACCTGGTGTTATTCCGGTTAACTCTGTCGGTTACGAGGTGTTTCTGCTCCTGTTGCAGTTTTTGTACAGTGGACAAGTTTCTATTGTTCCTCAAAAACATGAACCTAGGCCTAATTGTGGTGAAAGAGGTTGTTGGCATACGCATTGTACCTCAGCTGTTGATCTTGCTCTTGATACCCTTGCTGCTGCTAGATACTTTGGAGTTGAACAGCTTGCATTGCTCACTCAGAAGCAACTAGTGAGCATGGTGGAAAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAGAAAGCAAGAAATGCACCAACTTTGGACAACATGTTCCCACCTTGTTGCAAAGTCAGGTCTCCCACCTGAAATCCTAGCTAAGCATCTCCCTATCGATGTAGTCGCCAAAATCGAAGAGCTTCGTCTCAAATCCTCCTTAGCACGCCGCTCCTTAATGCCactccaccaccaccatcaccaccaccaccatgaCCTTGGTGAGCTCGAAGATCAGAAAATCCGCCGAATGAGGCGAGCCCTCGATTCCTCTGATGTTGAACTTGTCAAACTCATGGTCATGGGAGAAGGCCTAAACCTCGATGAAGCATTGGCATTACACTATGCAGTTGAGAATTGCAGCAGAGAAGTGGTGAAAGCCTTGCTTGAACTCGGTGCTGCCGATGTTAACTACCCGGCTGGTCCTGCCGGGAAAACACCGCTTCATGTGGCCGCTGAAATGGTTTCACCGGAAATGGTAGCGGTTTTGCTTGATCATCATGCAGACCCGACAATTAGAACAGTTGATGGTGTAACACCTTTGGATATACTCAGAACCCTAACCTCTGATTTTCTATTCAAAGGTGCTGTTCCTGGATTAACACACATTGAACCAAACAAGTTAAGACTTTGCTTGGAACTTGTTCAATCCGCCGCTCTTGTTCTTTCGCGCGAAGAAAACAATgccaataacaacaataataatgcTTCTTCGTCAGCAGCACCAATTTATCCTCCAATGAGTGAAGATCATAGTAGCAGCAGCAGTGgtaacaacaataacaatagcAACAACATTGGTAACCTGAATTTGGATTCTAGATTGGTGTATCTCAATCTTGGTGCTAGTCAAATGGGTGGTGATGATGATAGTGGACACAATAGTCATCATCATAGGGAAGCCATGAATCGTCAAGGTGGTCATGGATGTGACCCAACAATGTATCATCACTCTCATGACTACTAA 1470 0.4259 MSLEETLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPTGGGTSRQPTVRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLVSMVEKASIDDVMKVLIASRKQEMHQLWTTCSHLVAKSGLPPEILAKHLPIDVVAKIEELRLKSSLARRSLMPLHHHHHHHHHDLGELEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHVAAEMVSPEMVAVLLDHHADPTIRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREENNANNNNNNASSSAAPIYPPMSEDHSSSSSGNNNNNSNNIGNLNLDSRLVYLNLGASQMGGDDDSGHNSHHHREAMNRQGGHGCDPTMYHHSHDY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01799 489 ProSiteProfiles Ankyrin repeat region circular profile. 311 337 - -
Tsu01g01799 489 Gene3D - 244 359 IPR036770 -
Tsu01g01799 489 Pfam Ankyrin repeats (3 copies) 259 341 IPR002110 GO:0005515
Tsu01g01799 489 Pfam BTB/POZ domain 16 110 IPR000210 GO:0005515
Tsu01g01799 489 ProSiteProfiles BTB domain profile. 25 107 IPR000210 GO:0005515
Tsu01g01799 489 Pfam Domain of unknown function (DUF3420) 195 253 IPR024228 -
Tsu01g01799 489 Gene3D Potassium Channel Kv1.1; Chain A 3 193 IPR011333 -
Tsu01g01799 489 SMART ANK_2a 311 340 IPR002110 GO:0005515
Tsu01g01799 489 SMART ANK_2a 276 306 IPR002110 GO:0005515
Tsu01g01799 489 SMART BTB_4 25 160 IPR000210 GO:0005515
Tsu01g01799 489 SUPERFAMILY Ankyrin repeat 270 354 IPR036770 -
Tsu01g01799 489 MobiDBLite consensus disorder prediction 458 473 - -
Tsu01g01799 489 ProSiteProfiles Ankyrin repeat profile. 311 343 IPR002110 GO:0005515
Tsu01g01799 489 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 488 IPR044284 GO:0099402
Tsu01g01799 489 SUPERFAMILY POZ domain 10 158 IPR011333 -
Tsu01g01799 489 PANTHER REGULATORY PROTEIN NPR5 1 488 - -
Tsu01g01799 489 MobiDBLite consensus disorder prediction 396 435 - -
Tsu01g01799 489 CDD BTB_POZ_NPR_plant 8 160 - -
Tsu01g01799 489 MobiDBLite consensus disorder prediction 450 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01799 Tsu-Chr1 18018769 18022995 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu01g01799 BTB 2.4e-15 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01799 K14508 - qsu:112012060 771.541