Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01780 ATGGCGGAATACGATCTAACACCGCGAATGGCACCAAATCTTGATCGACATTTAGTCTTCCCTCTCTTAGAGTTTCTTCAAGAGAGACAATTATACGACGATAACCATATCCTTAAGGCTAAGATCGATCTCTTGAACAACACAAACATGGTTGATTACGCTATGGATATTCACAAGACGCTTTACCATACTGAAGATGTTCCTCAGGATATGGTTGAACGTAGGGCTGATGTTGTTGCTCGTCTTAAGTCTCTTGAAGATGCTGCTGCTCCTCTTGttgcttttcttcagaatcctgctGCTGTTCAGGAATTGAGGGCTGATAAACATTACAATCTCCAGATGCTCAATGACAAATACCAGATTGGTCCTGCACAGATAGAGGCATTATACCAATATGCGAAATTTCAGTTTGAATGTGGAAACTATTCTGGTGCGGCTGATTACCTTTTGCGATACTTGGCCACAGCGTTTATTGTCAACAAGCGCAGGAGACCTcaattcaaagattttattaaaGTTATTCAACAAGAGCAGAATTCATATAAGGACCCCATCACTGAGTTTCTGGCTTGTGTTTATGTCAACTATGACTTTGATGGCGCACAAAAGAAGATGAGGGAGTGTGAAGAAGTAATTCTCAATGATCCCTTCCTTGGTAAACGAGTTGAAGAAAGCAACTTCTCAACTGTACCATTAAGAGACGAGTTTCTTGAAAATGCCAGGCTATTTATTTTTGAGACTTACTGTAGAATACACCAACGCATTGACATGGGAGTACTTGCTGAGAAACTAAATTTGAATTACGAGGAGGCTGAGAGATGGATTGTGAATCTCATCCGTGGCTCAAAGCTTGATGCCAAAATTGACTCTGAAACTGGAACAGTTATCATGGAACCTAATCATCCAAATGTGTATGAGCAGGTGATAGACCATACCAAAGCCCTTAACGGCCGCACTTACAAGTTGGTCACTCAACTTCTGGAACATGCACAAGCTCAGACAGCTCGATAA 1014 0.4004 MAEYDLTPRMAPNLDRHLVFPLLEFLQERQLYDDNHILKAKIDLLNNTNMVDYAMDIHKTLYHTEDVPQDMVERRADVVARLKSLEDAAAPLVAFLQNPAAVQELRADKHYNLQMLNDKYQIGPAQIEALYQYAKFQFECGNYSGAADYLLRYLATAFIVNKRRRPQFKDFIKVIQQEQNSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRGSKLDAKIDSETGTVIMEPNHPNVYEQVIDHTKALNGRTYKLVTQLLEHAQAQTAR 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01780 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 147 335 IPR016650 GO:0003743|GO:0005737|GO:0005852
Tsu01g01780 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 150 IPR016650 GO:0003743|GO:0005737|GO:0005852
Tsu01g01780 337 SMART eIF3_N_2 5 137 IPR019010 -
Tsu01g01780 337 Gene3D - 127 333 - -
Tsu01g01780 337 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Tsu01g01780 337 SUPERFAMILY "Winged helix" DNA-binding domain 232 303 IPR036390 -
Tsu01g01780 337 PIRSF Transl_init_eIF3e 1 151 IPR016650 GO:0003743|GO:0005737|GO:0005852
Tsu01g01780 337 PIRSF Transl_init_eIF3e 146 337 IPR016650 GO:0003743|GO:0005737|GO:0005852
Tsu01g01780 337 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 329 IPR016650 GO:0003743|GO:0005737|GO:0005852
Tsu01g01780 337 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 232 316 - -
Tsu01g01780 337 ProSiteProfiles PCI domain profile. 118 303 IPR000717 -
Tsu01g01780 337 SMART PINT_4 232 316 IPR000717 -
Tsu01g01780 337 Pfam PCI domain 185 299 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01780 Tsu-Chr1 17828532 17832208 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01780 146 337 Eukaryotic Initiation Factors Gene Family AT3G57290 85.417 5.08e-120 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01780 K03250 - gmx:100797748 373.244