Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01776 ATGGCGCAGAGTAATTGGGAAGCTGATAAGATGCTTGATGTTTACATATATGATTatttgatgaagaaaaagtTGAACAATACTGCCAAGTCATTTATGACAGAAGGGAAGGTTTCTCCTGATCCAGTAGCAATTGATGCTCCTGGAGGTTTTCTTTTTGAGTGGTGGTCTGTTTTCTGGgatatttttattgcaaggacaaaTGAGAAACATTCTGACAATGCTGCAGCATATTTAGAGGCTCAACAGATTAAAGCGAAAGAACAACAATTGCAAATGCAGCAGTTGCAATTAATGCGTCATGCTCAGCTGCAAAAAAGAGATCCTAATCATCCTCCCATTGGAAGTCCTCTAAATGCTATCACCACAGAAGGAGTCATAGGGCAATCTACTGCCACTGCTTTGGCTGCAAAAATGTATGAGGATCGGATGAAGAGCTCTAATCCTATGGATACAGAGACATCCCAACCACTTTTAGATGCTAGAATGGCCCTTTTGAAATCAACAAATCATCCCGGTCAGATGGTTCAAGCAAATTCAGGAAGTGTGACAGCTTTGCAGCAAATGCAGGCTCGAACTCAGCAAATCCCTCAGGATACCAAAAGCGAAGTCAACATGGGAAACATGCAAAGATCCTTACCTATGGATCCTTCTTCCATTTATGGGCAGGGAGGAATGCAGTCAAAGTCTGGAATCACAAATGCAGGATTAAATCAGGGAGTTGGTGGTCTCACACTAAAAGGATGGCCTTTAACTGGCATAGAACAAATTCGCCCGGGTTTTGGAGCTCAAGTTCAAAAGCCTCTCCTTCAGAGTGCAAATCAGTTTCAGCTTTTgccacaacaacaacagcagcagctCCTTGCACAGGCACATGCACATGCACAAGGAAATATCGGAAATTCACAAGTGTATGGAGATATGGATCCACAACGATTAAGGGGATTAGCTAGGGGTGGTTTGAATGTGAAAGACAGCCAACCAATTGCAAATGATGGGCCAGTAGGTTCTCCAATGCAATCTACTTCATCTAAGcAGATCAACATGCCACAGATGCAACAATCCATCTCCCAGCAACAACAGGATCCTTTGCATCCACAGCAAATGGTTCAGAATAACCGAAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAATAGTACTGGTACAGGAAATACACATGGCCCTTCTAATTCTCAACCATCAACTCCATCTACTCATACTCCTGGTGATGGGGTTGCTATGGTTGGTAACTTGCAGAATGTTACTGGTGTATCCAAAGGTTTGATGATGTATGGTACTGAAGGAGCAGGCGGTCTTGCATCCTCCACAAACCAGCTGTTGCAGGATGACATGGAACATTTTGGAGATGTTGGCTCCTTAGATGATAATGTGGAATCATTTCTCTCACAAGATGATGGTGATGGGAAGGACTTATTTGGGACGTTGAAACGGAACCCTTCTGAGCATGCTACAGATGCTTCAAAAGCCTTTTCCTTCAGTGAAGTTGGTTCTATACGCAAAAGCAATGGAAAAGTTGTTTGCTGTCATTTCTCGTCAGATGGGAAAATATTAGCCAGTGCTGGACATGACAAGAAgGTTGTTCTGTGGAACATGGAGACACTGCAAACACAGAGCACACCAGAGGAACACACTGTTATTATTACCGACGTTCGCTTCAGACCAAATTCAACTCAGCTGGCAACATCTTCGTTTGATACAACTGTTCGGCTTTGGGATGCTGCAGAtCCAAGCTTTTCTTTGCAGGCATATAGTGGTCATACTTCACATGTTGCATCCCTTGATTTTCACCCtaagaaaaatgatattttctGCTCATGTGATGATAACAATGAGATTCGCTTATGGAATATTAGTCAATATTCTTGTACTCGTGTTTTCAAGGTCATGTGcgaaatttatttgattttgctCTCATAA 1941 0.408 MAQSNWEADKMLDVYIYDYLMKKKLNNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDNAAAYLEAQQIKAKEQQLQMQQLQLMRHAQLQKRDPNHPPIGSPLNAITTEGVIGQSTATALAAKMYEDRMKSSNPMDTETSQPLLDARMALLKSTNHPGQMVQANSGSVTALQQMQARTQQIPQDTKSEVNMGNMQRSLPMDPSSIYGQGGMQSKSGITNAGLNQGVGGLTLKGWPLTGIEQIRPGFGAQVQKPLLQSANQFQLLPQQQQQQLLAQAHAHAQGNIGNSQVYGDMDPQRLRGLARGGLNVKDSQPIANDGPVGSPMQSTSSKQINMPQMQQSISQQQQDPLHPQQMVQNNRKRKGPTSSGAANSTGTGNTHGPSNSQPSTPSTHTPGDGVAMVGNLQNVTGVSKGLMMYGTEGAGGLASSTNQLLQDDMEHFGDVGSLDDNVESFLSQDDGDGKDLFGTLKRNPSEHATDASKAFSFSEVGSIRKSNGKVVCCHFSSDGKILASAGHDKKVVLWNMETLQTQSTPEEHTVIITDVRFRPNSTQLATSSFDTTVRLWDAADPSFSLQAYSGHTSHVASLDFHPKKNDIFCSCDDNNEIRLWNISQYSCTRVFKVMCEIYLILLS 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01776 646 Pfam LisH 10 36 IPR006594 GO:0005515
Tsu01g01776 646 SMART Lish 8 40 IPR006594 GO:0005515
Tsu01g01776 646 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 591 626 - -
Tsu01g01776 646 ProSitePatterns Trp-Asp (WD) repeats signature. 525 539 IPR019775 -
Tsu01g01776 646 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 635 IPR044716 GO:0003714
Tsu01g01776 646 MobiDBLite consensus disorder prediction 321 415 - -
Tsu01g01776 646 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG_HOMOLOG 1 635 - -
Tsu01g01776 646 ProSiteProfiles Trp-Asp (WD) repeats profile. 506 547 IPR001680 GO:0005515
Tsu01g01776 646 Coils Coil 79 99 - -
Tsu01g01776 646 MobiDBLite consensus disorder prediction 333 409 - -
Tsu01g01776 646 SMART WD40_4 541 580 IPR001680 GO:0005515
Tsu01g01776 646 SMART WD40_4 584 624 IPR001680 GO:0005515
Tsu01g01776 646 SMART WD40_4 499 538 IPR001680 GO:0005515
Tsu01g01776 646 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Tsu01g01776 646 Pfam WD domain, G-beta repeat 543 580 IPR001680 GO:0005515
Tsu01g01776 646 Pfam WD domain, G-beta repeat 511 538 IPR001680 GO:0005515
Tsu01g01776 646 Pfam WD domain, G-beta repeat 588 624 IPR001680 GO:0005515
Tsu01g01776 646 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 506 541 - -
Tsu01g01776 646 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 580 - -
Tsu01g01776 646 Gene3D - 482 638 IPR015943 GO:0005515
Tsu01g01776 646 ProSiteProfiles Trp-Asp (WD) repeats profile. 591 633 IPR001680 GO:0005515
Tsu01g01776 646 SUPERFAMILY WD40 repeat-like 499 635 IPR036322 GO:0005515
Tsu01g01776 646 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 580 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01776 Tsu-Chr1 17766244 17778352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01776 523 635 Miscellaneous Gene Families AT5G08390 25.664 3.80e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Tsu01g01776 WD40 0.0017 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01776 - - var:108326218 1054.66