Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01771 ATGTGTTTTAGTTTACCTAGTCTAGATGATCCATTCAATGATAGACGCGGGAAAACGGAGTTCAAAACAAAGGAGGAACctgaaaagaaaaaaccttTCCAAAAAGAAAAGGCACTTCCTGTTAAAAGGAAGAGTGCACCCAGTGGGAAAGGAGCAGTTCGTCAAAGTATTTCACACAAATTGAATCAACGAACAGGAAATGATGATGCTAACAATAAAAGTCACTCAGAAAAGGATAATGAAATTTCAGACTTCCCttccaaatttgttttttggtgTCTGACTGCAATTGAAAATGCTCTGCGACATGATGATGCCTACACTGATGGAGAGGGCAACTCTTTCTTTCTTAACTCATGGGGGTTAGAATTTTCAAAGTGTTTTCCTACTGGCAAAGATCTAATGGACACCGATGGAACCTTTGCTACTACTGAGCAAATTGCATGGATGGTTTCTGCGGCAGCTGATACTTTTGTTAGAAAAGAGAAACAAGACGTATCAATAGAGACCCCTTTTCTTTTGTTCCTCGTTCCTTCCGAAAAAAAAGCTGCCCAGGTTCGAACGGTTTGCAAGCCTTTGAAATCTCTAGGAATACATACAGTGAGTATTCATCCTGGCGCTTCCTTAGATCATCAGATTCACGGTCTGAAAAGTTGTGAGCCTGAGTTTCTCATTGCTACTCCTGAGAGGCTCTTGGAACTTGTTTCAAAGAAGGCAATTGACATTTCTGGTGTCTCTATGCTGGTTATTGATGGGCTCAATGCTATTTGTAATGCTGGCCACGCTGATGCAATGAAATCCATCAAGAAGTTGATTTCTGGCAATCCCAGTCTTGTGGTTTTCAATGATAGCTTTAACCACACATCTATCCCAGTTGTTCGGCATCTTTTGACGAGACCTATTTGTAGGATATCTATTGATAATTCAATCGTCAGCCTAAGTTCATGCATTGTACAGTCTGTTCAAGTGTGTACATCAGAAGAAGATAAACGTGTTAAGAGCCTCGATATCCTGTGTCAATTTTGGAGCAGCCAGAATCATAACTCAAACCTTCTATATATTTTAAGGAAGGATGTCAACTGCACTAAATTAGTGAAGGCTCTCGAATCCATGGGTTGTTCCACTTCACTTGATTCTGGGGCAGCGAATATTAATAATAGTGCTGTGGATTCAAAAAGGAAATTGGTTACAATGATTGATTTAGAGGATATCTCTACTGCGGATATAGGAATGTATGATGTAATAGTCCTACCAAGTTTTGTACCCTCCATGGACACTTATGAGCATATTTTGACAAACATGGCCCGCCAAAGTGTCAATGGTGTTTTGCATGGTTTCTTAACAAAAAGTGATACAGAACTTGCTGGACCACTCATTTCAATTCTTGAACAATGTAAGCAGGAAGTGCCCGAGACCCTGCAAGATCTGCATCAGGCATCAAACATGTTGGAAGATTGA 1458 0.3937 MCFSLPSLDDPFNDRRGKTEFKTKEEPEKKKPFQKEKALPVKRKSAPSGKGAVRQSISHKLNQRTGNDDANNKSHSEKDNEISDFPSKFVFWCLTAIENALRHDDAYTDGEGNSFFLNSWGLEFSKCFPTGKDLMDTDGTFATTEQIAWMVSAAADTFVRKEKQDVSIETPFLLFLVPSEKKAAQVRTVCKPLKSLGIHTVSIHPGASLDHQIHGLKSCEPEFLIATPERLLELVSKKAIDISGVSMLVIDGLNAICNAGHADAMKSIKKLISGNPSLVVFNDSFNHTSIPVVRHLLTRPICRISIDNSIVSLSSCIVQSVQVCTSEEDKRVKSLDILCQFWSSQNHNSNLLYILRKDVNCTKLVKALESMGCSTSLDSGAANINNSAVDSKRKLVTMIDLEDISTADIGMYDVIVLPSFVPSMDTYEHILTNMARQSVNGVLHGFLTKSDTELAGPLISILEQCKQEVPETLQDLHQASNMLED 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01771 485 Pfam DEAD/DEAH box helicase 167 272 IPR011545 GO:0003676|GO:0005524
Tsu01g01771 485 MobiDBLite consensus disorder prediction 51 69 - -
Tsu01g01771 485 Gene3D - 160 312 IPR027417 -
Tsu01g01771 485 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 ISOFORM X1 2 484 - -
Tsu01g01771 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 301 IPR027417 -
Tsu01g01771 485 MobiDBLite consensus disorder prediction 1 81 - -
Tsu01g01771 485 MobiDBLite consensus disorder prediction 11 43 - -
Tsu01g01771 485 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 2 484 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01771 162 476 Eukaryotic Initiation Factors Gene Family AT1G72730 20.859 1.33e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01771 - - gmx:100809099 634.409