Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01768 atgtaCGGCGGTGGTCACCGTGAACGTGAATCTGAATCTGACACAACGAGAATGCacagtgatgaagatgatgaagatggagACGATGATGAAGGTTCGTTCAAGAGTTGGGCAAAGCAAACAGAAGAAAGCTATCAGTTACAACTCGCACTGGCGCTTCGCATTTCATCTCATTCAGCTTCTTCTGCTCAATCCAATTGCTTGTTGGATTTTCAACctacttcttctccttcttcttctgattcaCCTCAATCACTTTCACACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCCGACAAAGTTCTAGATGGCTTTTACATAATCCATGGGATGGATCCATATACATGGACTATAAGTACTGATATGCAGAATGTTGGTATGATTCCATCATTTGAATCACTGATGTCTGTTAAACCGTGTGATAACTCGTCAGTTGTGGTGGTTGCTATTGACAAATCTAGAGACCCTGGCTTGAGAGAACTACAAAGTGGGGTATTAAGTCTTTCAAGTAACTGGATTACTATCAAAGATGCAACTGATCAGCTTGCAAATCTTGTTTATAGTAGGATGGGGGGAGGATCTTCCGACGAGGAACATTTAGGTACACGCTGGAAGGAATGCTCTGAATTACTTAAAAGCTGTCTACAATGTATCATTCTTCCAATTGGGAGCTTACCAGTTGGCCTTTGTATCCATCGAGCATTGCTATTTAAAGTGTTAGCGGATTTAATTAACCTACCGTGTCGAATTGCTAAGGGCTGCAAGTATTGTAGAAAGGACATGGGTGCTTCTTGTATAGTACAATTTGGTTCTGACAGGGAGTATATGGTTGACTTAGTAGGAAGGCCTGGGGAAATATGTCAACCTGATTCTTCAGTGAATTCTGCATCTTCGATGTCGATCCCTTCACCATTATGTCATCCAAGGTTCAAGCCAGTTGAAACAGCTGAATATACAAAGACAATGGCCCAATTGTATTTCTTGGACAACCAAGCACTGCATCTTGTATTTGATACCACATCAGGAGGTACTATTGATTGTAGTGACAAAATGGATCTACAGCAAACTGAAATGTTCGGCACAAACTATGCTAGTGGGAACAACCATATAGTTGCTTTGAGTCCTGGTACAGAGGAACATGTGTCTTTCAATGAAGCAACCCAGTCAGTAGTGAATTATTCAAGTCATGAAGTTGACCTTGAGGAGGAGGATCTGGACATTCCATGGAGTGAACTTATTTTGAAGGAGAACATTGGGACAGGGTCATTTGGAACTGTCCTTCGTGCAGACTGGCGTGGCTCTGATGTTGCTGTGAAGATACTTAAGGTGCAAGGTTTTGATTCTGAACGATTTGAAGAGTTTCTAAAGGAGGTCACACTCATGAAGCGCCTACGTCATCCAAACATTGTACTTCTAATGGGTGCCGTTATCCAACCACCAAAGTTATCAATAGTAACAGAATATTTATCAAGAGGAAGCTTGTATGAACTTCTGCAGATGCCAACTGTTGGACCCTCAATCAGTGAGAAGCGTCGTTTAAGTATGGCATATGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAAACCTCCCATTGTTCATAGAGATTTGAAGTCACCAAATCTTTTGGTTGATGATTCATACACTGTCAAGGTATGTGACTTTGGTCTTTCACGTACAAAAGCAAATACATATCTTTCATCTAGAACAGCTGCCGGAACTCCTGAATGGATGGCACCAGAAGTCATCCGAGGTGAACAATCAAATGAAAAATGTGATGTATTTAGCTTTGGTGTAATCTTGTGGGAACTGGTGACTCTTCAACAACCATGGAGGCAGTTAAATCCTTCACAGGTAGGTTATTTGCCTTGTCTTGACACTTTGGATTGTAAGCTTATCTCTAGAATACCGTGCAGAAGAAACAATATTGTTCCTTTCTTTGAACTCTGA 1956 0.3988 MYGGGHRERESESDTTRMHSDEDDEDGDDDEGSFKSWAKQTEESYQLQLALALRISSHSASSAQSNCLLDFQPTSSPSSSDSPQSLSHRFWVNGCLQYSDKVLDGFYIIHGMDPYTWTISTDMQNVGMIPSFESLMSVKPCDNSSVVVVAIDKSRDPGLRELQSGVLSLSSNWITIKDATDQLANLVYSRMGGGSSDEEHLGTRWKECSELLKSCLQCIILPIGSLPVGLCIHRALLFKVLADLINLPCRIAKGCKYCRKDMGASCIVQFGSDREYMVDLVGRPGEICQPDSSVNSASSMSIPSPLCHPRFKPVETAEYTKTMAQLYFLDNQALHLVFDTTSGGTIDCSDKMDLQQTEMFGTNYASGNNHIVALSPGTEEHVSFNEATQSVVNYSSHEVDLEEEDLDIPWSELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDSERFEEFLKEVTLMKRLRHPNIVLLMGAVIQPPKLSIVTEYLSRGSLYELLQMPTVGPSISEKRRLSMAYDVASGMNYLHQMKPPIVHRDLKSPNLLVDDSYTVKVCDFGLSRTKANTYLSSRTAAGTPEWMAPEVIRGEQSNEKCDVFSFGVILWELVTLQQPWRQLNPSQVGYLPCLDTLDCKLISRIPCRRNNIVPFFEL 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01768 651 MobiDBLite consensus disorder prediction 1 37 - -
Tsu01g01768 651 Pfam Ethylene-responsive protein kinase Le-CTR1 84 287 - -
Tsu01g01768 651 CDD STKc_MAP3K-like 419 621 - -
Tsu01g01768 651 PRINTS Tyrosine kinase catalytic domain signature 528 546 IPR001245 GO:0004672|GO:0006468
Tsu01g01768 651 PRINTS Tyrosine kinase catalytic domain signature 575 585 IPR001245 GO:0004672|GO:0006468
Tsu01g01768 651 PRINTS Tyrosine kinase catalytic domain signature 487 500 IPR001245 GO:0004672|GO:0006468
Tsu01g01768 651 PRINTS Tyrosine kinase catalytic domain signature 594 616 IPR001245 GO:0004672|GO:0006468
Tsu01g01768 651 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g01768 651 Gene3D Transferase(Phosphotransferase) domain 1 492 642 - -
Tsu01g01768 651 ProSiteProfiles Protein kinase domain profile. 413 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01768 651 Pfam Protein tyrosine and serine/threonine kinase 414 621 IPR001245 GO:0004672|GO:0006468
Tsu01g01768 651 ProSitePatterns Serine/Threonine protein kinases active-site signature. 534 546 IPR008271 GO:0004672|GO:0006468
Tsu01g01768 651 ProSitePatterns Protein kinases ATP-binding region signature. 419 440 IPR017441 GO:0005524
Tsu01g01768 651 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 385 621 - -
Tsu01g01768 651 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 26 356 - -
Tsu01g01768 651 SMART serkin_6 413 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g01768 651 SUPERFAMILY Protein kinase-like (PK-like) 390 624 IPR011009 -
Tsu01g01768 651 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 385 621 - -
Tsu01g01768 651 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 26 356 - -
Tsu01g01768 651 Gene3D Phosphorylase Kinase; domain 1 406 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01768 Tsu-Chr1 17677412 17688704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01768 37 621 MAP Kinase Kinase Kinase AT5G03730 57.285 0.0 623
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Tsu01g01768 PK_Tyr_Ser-Thr 3.2e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01768 K14510 - gmx:100807496 1002.28