Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tsu01g01752 | atgtctAAAACACTTTGGTCTGGTGATGATGTTACTAGAGAGAACATAACGCAAAAGCGCAAGATGGAGGAAACACTTGGTGCTGATTCAGAAGTATCATTGTCTCTGAGTTTAGGACGTGGAGGTGGAGGAGGAGGATCTTCGTTCAAATCCCTCAAGAGCCGTGGGGAGCAAAGGGATTATCCATGTAAGTTTTGCGACAAGAAGTTTTTAACTTCTCAAGCCTTAGGAGGACACCAAAACGCCCATAGGCGTGAAAGGGTGCTTTCAAAAATGGACAAAGAAATTCAAATGGGAACTTTTGCACTTGGTCCTCCTATATGTCCATACTCAAATCATCtttatcatcatcaatatcCCTTCACTCCTGCAGGATCCAATTCTTTTTACCATGGAATTGGATCTCCAGCTCATCTTGTTGCACCTGCAGGCTATGGTAACCCATTTGGGATGATCAACAACAACTCTTCTTGGGCTACTCAAACTTTGCTGAATAATTATAACAATAATATGCAAATTTCTTCATTTGGTGCTGCTCTTGGTAATCCTTTTCTTTTGGGAAATAACAATCACAATGTCCCAAATAACCCcaacatttcatcatcattcCATGCTCCCAAATAA | 624 | 0.3878 | MSKTLWSGDDVTRENITQKRKMEETLGADSEVSLSLSLGRGGGGGGSSFKSLKSRGEQRDYPCKFCDKKFLTSQALGGHQNAHRRERVLSKMDKEIQMGTFALGPPICPYSNHLYHHQYPFTPAGSNSFYHGIGSPAHLVAPAGYGNPFGMINNNSSWATQTLLNNYNNNMQISSFGAALGNPFLLGNNNHNVPNNPNISSSFHAPK | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tsu01g01752 | 207 | PANTHER | C2H2-TYPE ZINC FINGER PROTEIN | 1 | 197 | - | - | |
| Tsu01g01752 | 207 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 88 | IPR036236 | - | |
| Tsu01g01752 | 207 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 88 | IPR013087 | - | |
| Tsu01g01752 | 207 | MobiDBLite | consensus disorder prediction | 13 | 27 | - | - | |
| Tsu01g01752 | 207 | Gene3D | Classic Zinc Finger | 47 | 100 | - | - | |
| Tsu01g01752 | 207 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Tsu01g01752 | 207 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
| Tsu01g01752 | 207 | PANTHER | ZINC FINGER PROTEIN JAGGED | 1 | 197 | IPR045320 | GO:0003700 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Tsu01g01752 | Tsu-Chr1 | 17567396 | 17568019 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Tsu01g01752 | 57 | 153 | C2H2 Transcription Factor Family | AT5G25160 | 34.286 | 4.43e-12 | 61.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tsu01g01752 | - | - | mtr:MTR_2g067740 | 188.348 |