Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01737 ATGAGTTCTCAGAATTTGAGGAGTAACCGACAAAGAAATGAAACTTTACCAGCACGGGAGTCTTCACTGGGAGAGGGACCTGCTGAACGACTACAAGATCCCGTCATTGATTTTGCTGACAATAACGATGATGTCATTGAAACTTCGTCAAGAGACTTTGCTGAGGCGGTAGCAAATGTGAGGAAAACTCGTAGAAGGATTGAACGTGCCTCAAATATGGAAAATGTGACCATGCACGACAGAGAGGAGAGAGACCGCACTTTCCAACCAATTTATATCAATTTGGAAGAAGGCGCCAATGAGGTGATTGAAAATGTCACAGAGTCACTTGATACCAACAACGAAACTCTTGTGCCTGAAACTCAAACACCTGGACCTCCAAAAGAGCCTAGCATAAAATGTCCAATATGTATGCAACCTTCTGAGGAGGAGATGACAACAAGATGTGGCCATATTTTTTGCAGGAAGTGCATCACACCTGCACTGATGGCACGTCGTATATGCCCGACGTGCGGAAAAAAGGCTACTAAGAGGAGCCTAGTCAGGGTGTTTCTTCCATCTACCATAACTGATCATGAATTCTTTAGATGCAACATGTAG 600 0.44 MSSQNLRSNRQRNETLPARESSLGEGPAERLQDPVIDFADNNDDVIETSSRDFAEAVANVRKTRRRIERASNMENVTMHDREERDRTFQPIYINLEEGANEVIENVTESLDTNNETLVPETQTPGPPKEPSIKCPICMQPSEEEMTTRCGHIFCRKCITPALMARRICPTCGKKATKRSLVRVFLPSTITDHEFFRCNM 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01737 199 SUPERFAMILY RING/U-box 133 176 - -
Tsu01g01737 199 MobiDBLite consensus disorder prediction 1 35 - -
Tsu01g01737 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 192 IPR013083 -
Tsu01g01737 199 ProSiteProfiles Zinc finger RING-type profile. 134 171 IPR001841 -
Tsu01g01737 199 SMART ring_2 134 171 IPR001841 -
Tsu01g01737 199 ProSitePatterns Zinc finger RING-type signature. 149 158 IPR017907 -
Tsu01g01737 199 PANTHER ELFLESS, ISOFORM B 24 188 - -
Tsu01g01737 199 Pfam Zinc finger, C3HC4 type (RING finger) 133 171 - -
Tsu01g01737 199 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01737 Tsu-Chr1 17426871 17430557 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01737 40 188 C3H Transcription Factor Family AT3G07200 34.899 1.22e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01737 K22651 - gmx:100778432 125.946