Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01733 ATGAGTTCTCAGAATTTGAGGAGTAACAGACAAAGAAATGAAACTTTACCAGCATGGGAGTCTTTACAGGGAGAGGGACCTTCTCATCGAACACCAACTTGGGTCTCTTCACAGGGAGAGGGGCCCTCTGAACAACTACAAGTTCCCGTAGTTGATTTTGCTGAAAATGACGATGATGTCATTGAAACTTCGTCAAGAGACTTTGCTGAGGCGGTCGCAAATGTGAGGAGAACTCGTAGAAGGACCGAACGTGCCTCAAATATGGAAAATCAAACCAGGCCAACTTATTTTATGCATGACAGACAGGACGGAGACAACTCTTTCCAACCAATTGATGCTATTTATATCGATTTGGCAGGAGGCACCAGTGAAGTGATTGAAAATGCCACAAAGTCACTTGATTCGAACAACGAAACTCTTGAGCTTGAAAATCAAACACCTGAACCTCCAAAAGTGCCTAGCATAAAATGTCCAATATGTATGCAACCTTCTGAGGAGGAAGTAACAACAAGATGTGGCCATATTTTTTGCAAGAAGTGCATCACAACTGCGTTGAGTTCACGTTGTATATGCCCGACATGCGGAAAAAAGGCTACTAAGAGGGGCCTAGTCAGGGTGTTTCTTCCATCTACTAGAATAATCGATGATGAATGTATGtccttttttatataa 672 0.4211 MSSQNLRSNRQRNETLPAWESLQGEGPSHRTPTWVSSQGEGPSEQLQVPVVDFAENDDDVIETSSRDFAEAVANVRRTRRRTERASNMENQTRPTYFMHDRQDGDNSFQPIDAIYIDLAGGTSEVIENATKSLDSNNETLELENQTPEPPKVPSIKCPICMQPSEEEVTTRCGHIFCKKCITTALSSRCICPTCGKKATKRGLVRVFLPSTRIIDDECMSFFI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01733 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 216 IPR013083 -
Tsu01g01733 223 SUPERFAMILY RING/U-box 156 199 - -
Tsu01g01733 223 SMART ring_2 157 194 IPR001841 -
Tsu01g01733 223 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Tsu01g01733 223 MobiDBLite consensus disorder prediction 26 44 - -
Tsu01g01733 223 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 - -
Tsu01g01733 223 ProSiteProfiles Zinc finger RING-type profile. 157 194 IPR001841 -
Tsu01g01733 223 PANTHER ELFLESS, ISOFORM B 5 212 - -
Tsu01g01733 223 MobiDBLite consensus disorder prediction 1 18 - -
Tsu01g01733 223 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01733 Tsu-Chr1 17368899 17371299 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01733 55 212 C3H Transcription Factor Family AT3G07200 35.000 1.18e-23 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01733 K22651 - gmx:100778432 128.642