Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01732 ATGAATTCTCAGAATTTGAGGAGTAACAGACAAAGAAATGAAACTTTACCAGCTTGGGAGTCTTCACAGGGAGAGGGACCCTCAGAACAATTACCAACTTTGGTGTCTTCACAGGGAGAGGGATCTGCTGAACGATTGTCAGCTGCTTGGCGACAACCAGCTTGGTTGTCTTCACAAGGAGAGGGACCCTATGTACGACCGTCAGCTACTTGGGGGCTACCAACCTGGGTGTCTTCACACAGAGAGGGACCATCTGCACGACTATCAACTGCTTTGAGACTACCAGCTTGGGTATCTTCACAGGATGAGGAACCATATGAACGACCGTCAGCTGCTTGGGGGCTACCAACTTGGGGGTCTTCACAGGGAGAGGGACCCTCTGAACCACTATCATCTTCTTATAGACTTCCTTGGTTGTCTTCACAGGATGAGGAACCCTATGAACGACCGTCAGCTTCTTGGGGGCTACCAACTTGGGGGTCTTCACAGCAAGAGGGACCCTCTGAACCACAATCAGCTTCTTATAGACTACCTTGGTTGTCTTCACAGGAAGATGGACCCTATGAACGACCATCGGCTGCTTGGGGGACACCAACTTCGGTGTCTTCACAAGGAGAGAGACCCTTTGAACGACTACAAGTTCCCGTGGTTGACTTTGTTGAAAATGACGATGATGTCATTGAAACTTCGTCAAGAGAGTTTGCTGAGGTTGAAAATGGCACAAAGTCATTTGATACTAACAAGGAAACTCTTGAGCCTGAAAATCAAACACTTGATCAACCTCCAAAAGAGCCTCACATAAAATGTCCAATATGTTTGCAACCTAGTGAGGAGGAAATGACAACAAGATGTGGCCATATTTTTTGCAAGAAGTGCATCATAACTGCGTTGAGTTCACGTTGTATATGCCCGACGTGCGGAAAAAAGACTACTAAGAGGGGCCTAGTCAGGGATGTAAATCAATTTGCAACAGCTTGA 978 0.4703 MNSQNLRSNRQRNETLPAWESSQGEGPSEQLPTLVSSQGEGSAERLSAAWRQPAWLSSQGEGPYVRPSATWGLPTWVSSHREGPSARLSTALRLPAWVSSQDEEPYERPSAAWGLPTWGSSQGEGPSEPLSSSYRLPWLSSQDEEPYERPSASWGLPTWGSSQQEGPSEPQSASYRLPWLSSQEDGPYERPSAAWGTPTSVSSQGERPFERLQVPVVDFVENDDDVIETSSREFAEVENGTKSFDTNKETLEPENQTLDQPPKEPHIKCPICLQPSEEEMTTRCGHIFCKKCIITALSSRCICPTCGKKTTKRGLVRDVNQFATA 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01732 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 217 324 IPR013083 -
Tsu01g01732 325 MobiDBLite consensus disorder prediction 99 208 - -
Tsu01g01732 325 MobiDBLite consensus disorder prediction 1 43 - -
Tsu01g01732 325 SMART ring_2 269 306 IPR001841 -
Tsu01g01732 325 PANTHER ELFLESS, ISOFORM B 243 317 - -
Tsu01g01732 325 SUPERFAMILY RING/U-box 268 312 - -
Tsu01g01732 325 MobiDBLite consensus disorder prediction 238 263 - -
Tsu01g01732 325 MobiDBLite consensus disorder prediction 155 179 - -
Tsu01g01732 325 MobiDBLite consensus disorder prediction 115 139 - -
Tsu01g01732 325 ProSitePatterns Zinc finger RING-type signature. 284 293 IPR017907 -
Tsu01g01732 325 MobiDBLite consensus disorder prediction 1 85 - -
Tsu01g01732 325 ProSiteProfiles Zinc finger RING-type profile. 269 306 IPR001841 -
Tsu01g01732 325 Pfam Zinc finger, C3HC4 type (RING finger) 268 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01732 Tsu-Chr1 17360480 17362641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01732 220 317 C3H Transcription Factor Family AT3G07200 40.000 1.86e-22 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01732 K22651 - gmx:100778432 95.1301