Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01694 ATGTCTATGTTGGATCTTAATGTTGATATAATCCATGTTGATGATTATTCAACTAATGTTCAAAAGGGTTTGCAACTTCAAACTTTTCCATCTGAAATATCAGATTCAAGAACCTCCAACTCTTCTGTTTCGAATCCAATAGAGGATGTCTCAGAAATAGtcaaggaagaaaaaaaagcagAAACAATCACAAGGACTCTTTTTCCTATGAGTGCTGATAGAGGAGGTAGATTATGTGATTCCATTACTCAAAGTTTGAACTTTGATGATAATGGACACAGAATCTTGCAGCAAAAGCAACCTAGGAAAAGTAGGAGAGGACCAAGGTCTCGAAGCTCGCAGTACCGAGGTGTTACCTTCTACCGTAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTAGGTGGATTTGACACTGCTCACGCTGCTGCAAGAGCATATGATAGGGCTGCTGTTATGTTTAGGGGAGTTGATGCTGATATAAACTTCATTTTGGGTGATTATGTGGAGGATTTGAAGCAGATGAAAGGTTTGAGTAAGGAAGAATTTATTCAAAGACTTCGTAGACAAACCAATGGAAACTCAAGGAGAAGTTCAACATACAGAAGTGCATTACCTATTCACAAATATCCTCATGAAGATCCACCATTTGCGGCCAAAACATTTTGTCATAAGTCACACATGAAGCAAGATCATGAAGTAGAAACTAGTTCTAAGGCCTCTACTACTTATAAGGGAGAAATAATTGCAAATTCCAACAAATTACATAATCTTGATTTAAGTCTAAGGATTTCAGCATCTTACAAGCAATTGAATAACAATAATTCTGGAGTTGGATTTTCTTCTGAATGTACACCTTATATGATACCTCAAGAAATGGGCACAATGGAGAAGGCTTTGTTAAACATTAAAAAGGAAGTTCCATTGCAACAAGTATTGGCCTGGAAATTTTGCAACAATGGAAGCATTGCATTGGGGTCGTTGCAGTCAAATGCAGCAGCATCATCAGGATTCGTTCCATCGCCCACACTTCCTTCAATTAACTCACATACAATTTTATCACTGTCTCAACCACAATATTATAGATGA 1107 0.3722 MSMLDLNVDIIHVDDYSTNVQKGLQLQTFPSEISDSRTSNSSVSNPIEDVSEIVKEEKKAETITRTLFPMSADRGGRLCDSITQSLNFDDNGHRILQQKQPRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVMFRGVDADINFILGDYVEDLKQMKGLSKEEFIQRLRRQTNGNSRRSSTYRSALPIHKYPHEDPPFAAKTFCHKSHMKQDHEVETSSKASTTYKGEIIANSNKLHNLDLSLRISASYKQLNNNNSGVGFSSECTPYMIPQEMGTMEKALLNIKKEVPLQQVLAWKFCNNGSIALGSLQSNAAASSGFVPSPTLPSINSHTILSLSQPQYYR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01694 368 ProSiteProfiles AP2/ERF domain profile. 114 170 IPR001471 GO:0003700|GO:0006355
Tsu01g01694 368 SMART rav1_2 114 176 IPR001471 GO:0003700|GO:0006355
Tsu01g01694 368 Gene3D AP2/ERF domain 113 171 IPR036955 GO:0003700|GO:0006355
Tsu01g01694 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 57 - -
Tsu01g01694 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 55 353 - -
Tsu01g01694 368 MobiDBLite consensus disorder prediction 90 115 - -
Tsu01g01694 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 3 57 - -
Tsu01g01694 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 55 353 - -
Tsu01g01694 368 SUPERFAMILY DNA-binding domain 113 170 IPR016177 GO:0003677
Tsu01g01694 368 Pfam AP2 domain 114 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01694 Tsu-Chr1 16645330 16648650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01694 3 273 AP2-EREBP Transcription Factor Family AT5G60120 41.071 5.05e-50 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu01g01694 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01694 K09284 - gmx:100783626 326.25