LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g01694	ATGTCTATGTTGGATCTTAATGTTGATATAATCCATGTTGATGATTATTCAACTAATGTTCAAAAGGGTTTGCAACTTCAAACTTTTCCATCTGAAATATCAGATTCAAGAACCTCCAACTCTTCTGTTTCGAATCCAATAGAGGATGTCTCAGAAATAGtcaaggaagaaaaaaaagcagAAACAATCACAAGGACTCTTTTTCCTATGAGTGCTGATAGAGGAGGTAGATTATGTGATTCCATTACTCAAAGTTTGAACTTTGATGATAATGGACACAGAATCTTGCAGCAAAAGCAACCTAGGAAAAGTAGGAGAGGACCAAGGTCTCGAAGCTCGCAGTACCGAGGTGTTACCTTCTACCGTAGGACTGGTAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTAGGTGGATTTGACACTGCTCACGCTGCTGCAAGAGCATATGATAGGGCTGCTGTTATGTTTAGGGGAGTTGATGCTGATATAAACTTCATTTTGGGTGATTATGTGGAGGATTTGAAGCAGATGAAAGGTTTGAGTAAGGAAGAATTTATTCAAAGACTTCGTAGACAAACCAATGGAAACTCAAGGAGAAGTTCAACATACAGAAGTGCATTACCTATTCACAAATATCCTCATGAAGATCCACCATTTGCGGCCAAAACATTTTGTCATAAGTCACACATGAAGCAAGATCATGAAGTAGAAACTAGTTCTAAGGCCTCTACTACTTATAAGGGAGAAATAATTGCAAATTCCAACAAATTACATAATCTTGATTTAAGTCTAAGGATTTCAGCATCTTACAAGCAATTGAATAACAATAATTCTGGAGTTGGATTTTCTTCTGAATGTACACCTTATATGATACCTCAAGAAATGGGCACAATGGAGAAGGCTTTGTTAAACATTAAAAAGGAAGTTCCATTGCAACAAGTATTGGCCTGGAAATTTTGCAACAATGGAAGCATTGCATTGGGGTCGTTGCAGTCAAATGCAGCAGCATCATCAGGATTCGTTCCATCGCCCACACTTCCTTCAATTAACTCACATACAATTTTATCACTGTCTCAACCACAATATTATAGATGA	1107	0.3722	MSMLDLNVDIIHVDDYSTNVQKGLQLQTFPSEISDSRTSNSSVSNPIEDVSEIVKEEKKAETITRTLFPMSADRGGRLCDSITQSLNFDDNGHRILQQKQPRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAVMFRGVDADINFILGDYVEDLKQMKGLSKEEFIQRLRRQTNGNSRRSSTYRSALPIHKYPHEDPPFAAKTFCHKSHMKQDHEVETSSKASTTYKGEIIANSNKLHNLDLSLRISASYKQLNNNNSGVGFSSECTPYMIPQEMGTMEKALLNIKKEVPLQQVLAWKFCNNGSIALGSLQSNAAASSGFVPSPTLPSINSHTILSLSQPQYYR	368

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Tsu01g01694	368	ProSiteProfiles	AP2/ERF domain profile.	114	170	IPR001471	GO:0003700\|GO:0006355
Tsu01g01694	368	SMART	rav1_2	114	176	IPR001471	GO:0003700\|GO:0006355
Tsu01g01694	368	Gene3D	AP2/ERF domain	113	171	IPR036955	GO:0003700\|GO:0006355
Tsu01g01694	368	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	3	57	-	-
Tsu01g01694	368	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED	55	353	-	-
Tsu01g01694	368	MobiDBLite	consensus disorder prediction	90	115	-	-
Tsu01g01694	368	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED	3	57	-	-
Tsu01g01694	368	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	55	353	-	-
Tsu01g01694	368	SUPERFAMILY	DNA-binding domain	113	170	IPR016177	GO:0003677
Tsu01g01694	368	Pfam	AP2 domain	114	161	IPR001471	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g01694	Tsu-Chr1	16645330	16648650	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu01g01694	3	273	AP2-EREBP Transcription Factor Family	AT5G60120	41.071	5.05e-50	172

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Tsu01g01694		AP2	2.9e-09	CL0081

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g01694	K09284		-	gmx:100783626	326.25

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