Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01692 ATGCAATTCGTAAGAGGTGCATCTTCAGTCAAAGGCTCATCTGGTTCATCTGCAAGTCAGGCTGTAACGGCGGAAGTTGATTCTCGGTCTATTTATGTTGGAAATGTTGACTATGCATGTACCGCTGAAATTGTTAGACGACATTTTCAATCATGTGGGACAGTAAATAGAGTCACTATTCTGATGAATGAATTTAGTCTCCCGAAAGGCTGTGCATATGTTGAGTTCCTCAACATTGATGCTGTTCCCAAGGCACTACTGCTTAACGAGTCTGAGCTTCATGGGCGAAAAATAAAGGTCTGTGCTAAGCGTACCAATATCCCCGGAATGAACCAATATTCCGGGAGATACACTTGCGTCTTAAGATCCAGAAGGCCACCTCCATTGTATCTTAGACCTGGTTATGGACGCGTTCCAAGGTTTAGACGTTCCATGCGATACAGACCATACTAG 453 0.4393 MQFVRGASSVKGSSGSSASQAVTAEVDSRSIYVGNVDYACTAEIVRRHFQSCGTVNRVTILMNEFSLPKGCAYVEFLNIDAVPKALLLNESELHGRKIKVCAKRTNIPGMNQYSGRYTCVLRSRRPPPLYLRPGYGRVPRFRRSMRYRPY 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01692 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 99 IPR000504 GO:0003723
Tsu01g01692 150 SUPERFAMILY RNA-binding domain, RBD 25 127 IPR035979 GO:0003676
Tsu01g01692 150 Gene3D - 4 109 IPR012677 -
Tsu01g01692 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 105 IPR000504 GO:0003723
Tsu01g01692 150 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 12 149 - -
Tsu01g01692 150 CDD RRM_II_PABPs 30 101 - -
Tsu01g01692 150 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 12 149 - -
Tsu01g01692 150 SMART rrm1_1 30 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01692 Tsu-Chr1 16618356 16621820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01692 30 82 Eukaryotic Initiation Factors Gene Family AT2G36660 40.351 1.84e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01692 K14396 - pda:103704619 189.889