Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu01g01692 | ATGCAATTCGTAAGAGGTGCATCTTCAGTCAAAGGCTCATCTGGTTCATCTGCAAGTCAGGCTGTAACGGCGGAAGTTGATTCTCGGTCTATTTATGTTGGAAATGTTGACTATGCATGTACCGCTGAAATTGTTAGACGACATTTTCAATCATGTGGGACAGTAAATAGAGTCACTATTCTGATGAATGAATTTAGTCTCCCGAAAGGCTGTGCATATGTTGAGTTCCTCAACATTGATGCTGTTCCCAAGGCACTACTGCTTAACGAGTCTGAGCTTCATGGGCGAAAAATAAAGGTCTGTGCTAAGCGTACCAATATCCCCGGAATGAACCAATATTCCGGGAGATACACTTGCGTCTTAAGATCCAGAAGGCCACCTCCATTGTATCTTAGACCTGGTTATGGACGCGTTCCAAGGTTTAGACGTTCCATGCGATACAGACCATACTAG | 453 | 0.4393 | MQFVRGASSVKGSSGSSASQAVTAEVDSRSIYVGNVDYACTAEIVRRHFQSCGTVNRVTILMNEFSLPKGCAYVEFLNIDAVPKALLLNESELHGRKIKVCAKRTNIPGMNQYSGRYTCVLRSRRPPPLYLRPGYGRVPRFRRSMRYRPY | 150 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu01g01692 | 150 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 31 | 99 | IPR000504 | GO:0003723 | |
Tsu01g01692 | 150 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 127 | IPR035979 | GO:0003676 | |
Tsu01g01692 | 150 | Gene3D | - | 4 | 109 | IPR012677 | - | |
Tsu01g01692 | 150 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 29 | 105 | IPR000504 | GO:0003723 | |
Tsu01g01692 | 150 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 12 | 149 | - | - | |
Tsu01g01692 | 150 | CDD | RRM_II_PABPs | 30 | 101 | - | - | |
Tsu01g01692 | 150 | PANTHER | POLYADENYLATE-BINDING PROTEIN 1-LIKE | 12 | 149 | - | - | |
Tsu01g01692 | 150 | SMART | rrm1_1 | 30 | 101 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu01g01692 | Tsu-Chr1 | 16618356 | 16621820 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu01g01692 | 30 | 82 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 40.351 | 1.84e-06 | 44.7 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu01g01692 | K14396 | - | pda:103704619 | 189.889 |