Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01681 ATGAGGTCTTGcatcatattacataatatgattgttgaggATGAACGAGATTCATATTCTCAACGTTGGACCGATTTTGAGCAGTCTGAGGAAAGTGGATCTAGTGCACCGCAACCATATTCAACCGAGGTATTACCCGCTTTTGCAAATCATGTGCGTGCTAGATCCGAGTTCCGTGATAAAAAAACTCATCACGAATTGCAAGCAGATCTAGTGAAGCACATATATACAAATCAAGGGTTTTCTCTGTCTCACAAACAACTTCATCACACTCACACTCAAACAACAAGattgtgttatttattgaagatgttttcaaaatcttttGGGAGAAAGCGTGAAGAAAGGTTATGTACTTTACCACACATCATTTGTCCGGACTTTCCATCTTCTCCTGACAAGAAATGTGGAGAAATTAATATTCTCAAACGCAAAAGGGTGCAAGAAGCATTAAAAACTTTTAGGGAATCATCTGATAAACGCTATCGTGATTACAAGTCAAATCAACTTGATAACTTCACAGCAAAAATAAAAGCTTTAAGAGATGCTGCAATAGACATGCAAGAGAAATATCAATGGGAAAACACTAGAAAGAGAATAGGGCATGTTGATGGAATTAATGTTGGTGACTTGTTTCAATACAGGGCTGAACTTGTTGTCATTGGTCTTCATCAACAATTCCAAAATGGTATTGATTATTTGGGTAAAAATGAGTGTTCTTTGGCTACTAGCATTGTTGTAACTCCTAAGTATGCTAATGAGATGAAGTCTAGTGGTTGTTTGATTTATGAAGGTCAAGGTAGTAACCCTAAAGTACGGAAACCTGTCACGCCTCATGATCAAAAGATGGAAACTGGAAATCTTGCTTTGCGAAATAGTATGAATGCTAAGCGTCCTGTTAGGGTTATATTGAAGATTTTCGGAAATTTTGTTGGTATGGAAGAGTGGAGGAACAATGTTTCTAATTGTTCATTTAAATATGATGGGCTGTATTCGGTTGACAAAATGACTCAAGAAAGGGGAGAGTATGGAAAACTTGTGTTCAAGTTTGAACTTAACAAACTTTCGGACCAACCCCCTTGTGTTTCACTTTCCCCTCGAGACGTTGTTATGGAAACAGAAACTTTCCAAAAGAGACTCAAATCTACAAATCATGCTGTCCCCAAGTATATTGTTCGAGTTATTGATATTTCGAAGGGGAAAGAAAAGTTTCCTATTCGGTTGGTGACAACGATAAGTTGTGGggagatatttaaaccttttgaTTACCAAGTTAGAATGACACATCCAAAGATGAATCACAAAATACTAGGTGGTGGATGTAATTGTGCAAATGCATGTGTTGGTTGTTTTAAGTGTGTTTGCAAAGCTAAGAATGGCGGGGCAATACCATATGATGGTAACAAAAGACTTATTTCTCCTTCGAAATCATCCATTATATATGAATGCGGTCCTTCTTGTGCATGTTCATCATCTTGCATCAACCGAGTGAGTCAATGTGGTATTCAATTCCAACTAGAAAtcttcaaaacaaaatcaaagggGTGGGGTGTTCGAACACGATCTTTCATTCCATCCGGAAGCTTTGTGTGCGAGCTCGTTGGAGAATTTGTTCATAACTACAAAAACACTGGATCAAATCTACATGTTGGtaactatatatttaatatagGTTTTGGCAAGGGCTTCATTGATGCAACTAGATATGGAAACATTGGGAGATTTATAAATCATAGTTGTTCTCCTAACCTATGTATGAAAGATGTTATGTATGATCACAGTGATAAGAGTGTACCTCACAAAATGTTGTTTGCTGTGAAGGACATACCCGCAGGTAGAGAGCTAAATTATGATTACAATTGCTTCAAGAGAAATTTCATGGTTGAGAGTAATACTTGCAACTGTTATTCATCAGAATGCCATGGACAAATTTACATTTGA 1941 0.3545 MRSCIILHNMIVEDERDSYSQRWTDFEQSEESGSSAPQPYSTEVLPAFANHVRARSEFRDKKTHHELQADLVKHIYTNQGFSLSHKQLHHTHTQTTRLCYLLKMFSKSFGRKREERLCTLPHIICPDFPSSPDKKCGEINILKRKRVQEALKTFRESSDKRYRDYKSNQLDNFTAKIKALRDAAIDMQEKYQWENTRKRIGHVDGINVGDLFQYRAELVVIGLHQQFQNGIDYLGKNECSLATSIVVTPKYANEMKSSGCLIYEGQGSNPKVRKPVTPHDQKMETGNLALRNSMNAKRPVRVILKIFGNFVGMEEWRNNVSNCSFKYDGLYSVDKMTQERGEYGKLVFKFELNKLSDQPPCVSLSPRDVVMETETFQKRLKSTNHAVPKYIVRVIDISKGKEKFPIRLVTTISCGEIFKPFDYQVRMTHPKMNHKILGGGCNCANACVGCFKCVCKAKNGGAIPYDGNKRLISPSKSSIIYECGPSCACSSSCINRVSQCGIQFQLEIFKTKSKGWGVRTRSFIPSGSFVCELVGEFVHNYKNTGSNLHVGNYIFNIGFGKGFIDATRYGNIGRFINHSCSPNLCMKDVMYDHSDKSVPHKMLFAVKDIPAGRELNYDYNCFKRNFMVESNTCNCYSSECHGQIYI 646
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01681 646 Pfam Pre-SET motif 397 496 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01681 646 Coils Coil 170 190 - -
Tsu01g01681 646 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 57 642 - -
Tsu01g01681 646 Pfam SET domain 515 620 IPR001214 GO:0005515
Tsu01g01681 646 Pfam SAD/SRA domain 200 358 IPR003105 -
Tsu01g01681 646 ProSiteProfiles SET domain profile. 504 620 IPR001214 GO:0005515
Tsu01g01681 646 ProSiteProfiles YDG domain profile. 201 354 IPR003105 -
Tsu01g01681 646 Gene3D SET domain 373 629 IPR046341 -
Tsu01g01681 646 SUPERFAMILY SET domain 381 626 IPR046341 -
Tsu01g01681 646 SMART set_7 504 626 IPR001214 GO:0005515
Tsu01g01681 646 Gene3D - 183 372 IPR036987 -
Tsu01g01681 646 SUPERFAMILY PUA domain-like 183 364 IPR015947 -
Tsu01g01681 646 MobiDBLite consensus disorder prediction 25 41 - -
Tsu01g01681 646 ProSiteProfiles Pre-SET domain profile. 439 501 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01681 646 SMART preset_2 394 488 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Tsu01g01681 646 SMART G9a_1 196 358 IPR003105 -
Tsu01g01681 646 MobiDBLite consensus disorder prediction 22 41 - -
Tsu01g01681 646 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 57 642 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tsu01g01681 Tsu-Chr1 16510817 16515567 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01681 195 642 Su(var)3-9 homologs AT1G73100 34.012 2.71e-74 249
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu01g01681 SAD_SRA 3.9e-39 CL0178
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01681 - K11420 gmx:100807574 565.074