Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g01678 ATGTCGAGCGGAAGGAAAGGTCAAGGTCGCCAAAAGATCGATATGAAAAAGATGAGCAACGAAATCAACCTGCAGGAGACTTTCTCAAAACGCCGTGGGTTCTTCAAGAAAGCTAGTGAACTTTGCACCCTTTGTGGTGTAGATGTTGCACTCGTTGTATTCTCACCTAGTGGGAAGGCATATTCCTTTGGTCATCCCAATGTTGATATAATCATAGATCGCTTTCTCTCTCAGGTACCACCCCAAAACAACGACACCATGAAATTCAATGAAGCTCGCCGCCACGCTCACGAGAGTGAGCTTAATGTTCAACTGACCCAAATCAACAACACGATGGACAACGTGAAGAAACATGGTGACGAGTTGAGCCATTTGCTCAAGGAGATCAAGACTTTATTTTGGTGGGCTTGTCCAGTCGTTGGGATGAATAAGGACACTCCTACTCAAACTCTTCCATTTTTTGTTGGCAATGCTTCATCCTCTAACATTCCTCTCCATATGCCAAATCCTCAACATGCTCAAATGTTTCCAACACAACTTCCCCAAAATCCTATGTTGCAATCTGATTTGTTTAGTTTCAACAACATAGGAGGAAGATATGAGTCGTGCGTTTCAGGGAAACTTCTTATTACACTATCCATGAGGCTCTATGATGAATTCAAAGAGATATTAAAGATTCAGAAGCTTCGAAGATCTGTATCTTTTGCGGGTTTCTACGGCTTTACTACGCTTATCATATATGCTTATGTTAACAATACAACTAGGGCTGGGTATTCTAGAGCTGATCAATACTATGCATCATACCCGGCTGGTACTGAGCTTTTAACTGACACCACAAAGTTATACAAATCTGCTCTTGGAAACTGCTTTGAATCTGAAGATTGGGGTCCATTTGAATTTTGCGTCATGGCGAAACACTTTGAGCGTCAAGCGAAGTCACCATATGCATATCATGCTCAATACATGGCACACCTCCTTTCTCATGGACAGCTTGATGGAAGTGGTTAA 1008 0.4216 MSSGRKGQGRQKIDMKKMSNEINLQETFSKRRGFFKKASELCTLCGVDVALVVFSPSGKAYSFGHPNVDIIIDRFLSQVPPQNNDTMKFNEARRHAHESELNVQLTQINNTMDNVKKHGDELSHLLKEIKTLFWWACPVVGMNKDTPTQTLPFFVGNASSSNIPLHMPNPQHAQMFPTQLPQNPMLQSDLFSFNNIGGRYESCVSGKLLITLSMRLYDEFKEILKIQKLRRSVSFAGFYGFTTLIIYAYVNNTTRAGYSRADQYYASYPAGTELLTDTTKLYKSALGNCFESEDWGPFEFCVMAKHFERQAKSPYAYHAQYMAHLLSHGQLDGSG 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g01678 335 ProSiteProfiles MADS-box domain profile. 8 67 IPR002100 GO:0003677|GO:0046983
Tsu01g01678 335 SMART madsneu2 8 66 IPR002100 GO:0003677|GO:0046983
Tsu01g01678 335 PANTHER TRANSMEMBRANE PROTEIN 214 335 - -
Tsu01g01678 335 PANTHER TRANSMEMBRANE PROTEIN 214 335 - -
Tsu01g01678 335 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Tsu01g01678 335 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Tsu01g01678 335 CDD MADS_MEF2_like 9 76 IPR033896 GO:0000977|GO:0045944
Tsu01g01678 335 SUPERFAMILY SRF-like 9 85 IPR036879 GO:0003677|GO:0046983
Tsu01g01678 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 63 IPR002100 GO:0003677|GO:0046983
Tsu01g01678 335 Gene3D - 20 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g01678 Tsu-Chr1 16490076 16495265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g01678 5 139 Type I MADS-box Gene Family AT5G60440 53.957 1.19e-42 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g01678 SRF-TF 3.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g01678 - - gmx:100306456 229.18